Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0035.11
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Query: B0035.11 CE05166 Yeast LEO1 protein like status:Confirmed TR:Q17431 protein_id:CAA97406.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Leo1 Leo1-like protein 605.6 2.8e-178 1
Cadherin_C_term Cadherin cytoplasmic region 4.1 5 1
DUF178 Uncharacterized ACR, COG1427 3.4 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF178 1/1 409 420 .. 251 262 .] 3.4 5.9
Leo1 1/1 98 424 .. 1 377 [] 605.6 2.8e-178
Cadherin_C_term 1/1 412 430 .] 1 19 [. 4.1 5
Alignments of top-scoring domains:
DUF178: domain 1 of 1, from 409 to 420: score 3.4, E = 5.9
*->elyYkrlyqqak<-*
e+y+kr++qq+k
B0035.11 409 EEYRKRKQQQKK 420
Leo1: domain 1 of 1, from 98 to 424: score 605.6, E = 2.8e-178
*->deekdphrSnernelssddderegsleldreiageddkefSdaEeat
d+e++p++Sn+r++ls++d+e++gsl+++++i++++++e++++E+a+
B0035.11 98 DREGKPKESNTRARLSDSDAESRGSLNDLQGIVMANPDEIDEDEKAK 144
kefkEedVpvkkeievetpnvklpagdsnevffikiPNFLsVetkPFDPe
+++++ +e++t++v+l+++ +++++f+++PNFLsV+t+PFDP+
B0035.11 145 EHVHD--------TEMVTGRVTLEYA-ADPPHFVRMPNFLSVATHPFDPQ 185
tfeeevdeeaakledeaDeegrqriklrvDeNTVRWReskdkdGkvvkES
++ee++d+e+ak +D+egr+r+klrv eNT+RWR++kd++Gk+++ES
B0035.11 186 HYEEDEDDEQAK----LDDEGRTRLKLRV-ENTLRWRVRKDENGKEIRES 230
NAkIVrWSDGSySLhvGNEifDileqplsedqLnHLfVkHeqqtllqsQE
NAkIV+W+DG++SL++GNEif+++++pl++++L+HL+Vk q+tl+++Q
B0035.11 231 NAKIVKWDDGTMSLYLGNEIFEVSLVPLNSNNLPHLYVK--QPTLMSAQ- 277
GgvikkkltFrPsStnSfGqtHrKltknrvatrqrkskgVKVltivgkDP
+v+++++tFrP+St+S+ tHrK+t+n+ a+r+rk+++VKV+++vg++P
B0035.11 278 -AVLTHRMTFRPHSTDSQ--THRKVTLNM-ADRSRKNAQVKVMDDVGQNP 323
ElekrerekkEeekLRarrRLrqkreklKnkkPLPVERRqLStGylEdll
E+++re+++kEee+LRa++R r++++++++k+
B0035.11 324 EITRRENARKEEESLRAHIR-RTQMVRNNFKV------------------ 354
dgddedYqydegededleieasRerkikNAKKsiKnrpgkgsgsesreak
+g+++++qy+++ed++ ++sR++k+k ++p++g++ses++++
B0035.11 355 RGPRYAGQYSDDEDMP---TSSRKGKKK-------EAPIIGASSESEDDH 394
aqttYsededegsdeEtrkekevkkegasr<-*
a+tt+++++d++sdeE+rk+k+++k+++++
B0035.11 395 ADTTKKSGSDSDSDEEYRKRKQQQKKQIVT 424
Cadherin_C_term: domain 1 of 1, from 412 to 430: score 4.1, E = 5
*->RrrkekvkKepliideDeD<-*
R+rk+++kK++ + de+ D
B0035.11 412 RKRKQQQKKQIVTSDEESD 430