Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0025.2
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Query: B0025.2 CE27562 status:Partially_confirmed TR:O01422 protein_id:AAB52366.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PCI PCI domain 81.6 7.1e-22 1
TPR TPR Domain 12.9 0.073 1
zf-C4_Topoisom Topoisomerase DNA binding C4 zinc fing 5.7 4 1
Gtr1_RagA Gtr1/RagA G protein conserved region 5.0 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/1 42 61 .. 15 34 .] 12.9 0.073
Gtr1_RagA 1/1 158 176 .. 152 170 .. 5.0 2.5
zf-C4_Topoisom 1/1 239 251 .. 6 19 .. 5.7 4
PCI 1/1 344 413 .. 1 75 [] 81.6 7.1e-22
Alignments of top-scoring domains:
TPR: domain 1 of 1, from 42 to 61: score 12.9, E = 0.073
*->gkydeAieayekALeldPnn<-*
gk+deAi+ +ek+Lel+ +
B0025.2 42 GKLDEAIKSFEKVLELEGEK 61
Gtr1_RagA: domain 1 of 1, from 158 to 176: score 5.0, E = 2.5
*->DlhrfekvSniiKqFKlSC<-*
Dlh+f+k i+Kq K+SC
B0025.2 158 DLHEFTKLEKIVKQLKVSC 176
zf-C4_Topoisom: domain 1 of 1, from 239 to 251: score 5.7, E = 4
*->kCGtgkLvlkrgkf<-*
+CG gk++l+ g+f
B0025.2 239 ECG-GKMHLRDGRF 251
PCI: domain 1 of 1, from 344 to 413: score 81.6, E = 7.1e-22
*->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
++h eeL+++ir+++Ll+l++ py+++++s+l+++l++s++ev
B0025.2 344 REHTEELMNNIRTQVLLRLIR-----PYTNVRISYLSQKLKVSQKEV 385
EkllsklIldgrihakIDqvngiveves<-*
+ll+++Ild+ ++akI++++g++e+ +
B0025.2 386 IHLLVDAILDDGLEAKINEESGMIEMPK 413