Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= Y43B11AR_4
(780 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17543386|ref|NP_501103.1| ribosomal protein S4E and KOW (29.0... 493 e-138
gi|39593507|emb|CAE61799.1| Hypothetical protein CBG05762 [Caeno... 476 e-133
gi|50401328|sp|O62739|RS4Y_MONDO 40S ribosomal protein S4, Y iso... 338 1e-91
gi|24663668|ref|NP_729871.1| CG11276-PA [Drosophila melanogaster... 337 1e-91
gi|46048780|ref|NP_990439.1| ribosomal protein S4 [Gallus gallus... 336 3e-91
gi|45360467|ref|NP_988912.1| 40S ribosomal protein S4 [Xenopus t... 335 6e-91
gi|16566725|gb|AAL26580.1| ribosomal protein S4 [Spodoptera frug... 335 6e-91
gi|47122925|gb|AAH70591.1| MGC81176 protein [Xenopus laevis] 334 1e-90
gi|1350996|sp|P47961|RS4_CRIGR 40S ribosomal protein S4 >gnl|BL_... 333 3e-90
gi|730662|sp|P41042|RS4_DROME 40S ribosomal protein S4 >gnl|BL_O... 333 3e-90
gi|50401280|sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 >gnl|BL... 332 4e-90
gi|34881128|ref|XP_343804.1| ribosomal protein S4, X-linked [Rat... 332 5e-90
gi|4506725|ref|NP_000998.1| ribosomal protein S4, X-linked X iso... 332 5e-90
gi|2119059|pir||PC4159 ribosomal protein S4 - cat (fragment) >gn... 332 5e-90
gi|227229|prf||1617101C ribosomal protein S4 331 9e-90
gi|12851918|dbj|BAB29207.1| unnamed protein product [Mus musculus] 331 9e-90
gi|50401327|sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X iso... 330 2e-89
gi|29126987|gb|AAH47994.1| Similar to ribosomal protein S4, X-li... 329 5e-89
gi|22758868|gb|AAN05593.1| ribosomal protein S4 [Argopecten irra... 327 2e-88
gi|50403757|sp|P79183|RS4Y_MACFU 40S ribosomal protein S4, Y iso... 327 2e-88
gi|48728364|gb|AAT46348.1| RPS4Y2 [Pan troglodytes] 326 3e-88
gi|38503308|sp|Q861U8|RS4Y_GORGO 40S ribosomal protein S4, Y iso... 323 2e-87
gi|28204681|gb|AAO37288.1| ribosomal protein S4 [Gorilla gorilla] 323 2e-87
gi|50260419|gb|EAL23076.1| hypothetical protein CNBA6010 [Crypto... 323 2e-87
gi|4506727|ref|NP_000999.1| ribosomal protein S4, Y-linked 1 Y i... 323 3e-87
gi|50550587|ref|XP_502766.1| hypothetical protein [Yarrowia lipo... 320 2e-86
gi|38503309|sp|Q861U9|RS4Y_PANTR 40S ribosomal protein S4, Y iso... 320 2e-86
gi|28204665|gb|AAO37286.1| ribosomal protein S4 [Pan paniscus] >... 320 2e-86
gi|38503307|sp|Q861U7|RS4Y_PONPY 40S ribosomal protein S4, Y iso... 319 5e-86
gi|38079504|ref|XP_193317.2| similar to ribosomal protein S4, X-... 319 5e-86
gi|28204689|gb|AAO37289.1| ribosomal protein S4 [Pongo pygmaeus] 319 5e-86
gi|45187482|ref|NP_983705.1| ADL391Cp [Eremothecium gossypii] >g... 318 1e-85
gi|20373177|ref|NP_620413.1| ribosomal protein S4, Y-linked 2 [H... 317 1e-85
gi|6321997|ref|NP_012073.1| Protein component of the small (40S)... 317 2e-85
gi|50303511|ref|XP_451697.1| unnamed protein product [Kluyveromy... 317 2e-85
gi|29841450|gb|AAP06482.1| similar to GenBank Accession Number L... 315 7e-85
gi|50287861|ref|XP_446360.1| unnamed protein product [Candida gl... 315 9e-85
gi|31199877|ref|XP_308886.1| ENSANGP00000013302 [Anopheles gambi... 314 2e-84
gi|19112469|ref|NP_595677.1| 40s ribosomal protein s4-2 [Schizos... 314 2e-84
gi|19113142|ref|NP_596350.1| 40s ribosomal protein S4A/S4.1 [Sch... 313 2e-84
gi|19115086|ref|NP_594174.1| 40s ribosomal protein s4 [Schizosac... 312 4e-84
gi|11276520|pir||T43429 ribosomal protein S4 - fission yeast (Sc... 312 6e-84
gi|46438762|gb|EAK98088.1| hypothetical protein CaO19.12801 [Can... 307 1e-82
gi|50423849|ref|XP_460509.1| unnamed protein product [Debaryomyc... 306 3e-82
gi|50426545|ref|XP_461869.1| unnamed protein product [Debaryomyc... 306 4e-82
gi|44967294|gb|AAS49568.1| ribosomal protein S4 [Protopterus dol... 305 7e-82
gi|38076974|ref|XP_124146.2| similar to ribosomal protein S4, X-... 302 5e-81
gi|44894458|gb|AAS48726.1| ribosomal protein S4 [Zea mays] 302 6e-81
gi|3914899|sp|O22424|RS4_MAIZE 40S ribosomal protein S4 >gnl|BL_... 301 8e-81
gi|28630198|gb|AAN77887.1| ribosomal protein S4 [Scyliorhinus ca... 300 2e-80
gi|7440143|pir||T01203 ribosomal protein S4 - maize >gnl|BL_ORD_... 300 2e-80
gi|12846200|dbj|BAB27070.1| unnamed protein product [Mus musculus] 299 4e-80
gi|22138108|gb|AAM93434.1| 40S ribosomal S4 protein [Glycine max] 299 5e-80
gi|1173256|sp|P46299|RS4_GOSHI 40S ribosomal protein S4 >gnl|BL_... 299 5e-80
gi|15237195|ref|NP_200650.1| 40S ribosomal protein S4 (RPS4D) [A... 298 7e-80
gi|9759565|dbj|BAB11167.1| 40S ribosomal protein S4 [Arabidopsis... 298 9e-80
gi|18415395|ref|NP_568179.1| 40S ribosomal protein S4 (RPS4B) [A... 298 9e-80
gi|28630193|gb|AAN77885.1| ribosomal protein S4 [Branchiostoma l... 297 2e-79
gi|48596901|dbj|BAD22763.1| ribosomal protein [Bromus inermis] 297 2e-79
gi|17979233|gb|AAL49933.1| AT5g58420/mqj2_10 [Arabidopsis thalia... 297 2e-79
gi|1173257|sp|P46300|RS4_SOLTU 40S ribosomal protein S4 >gnl|BL_... 296 3e-79
gi|18398393|ref|NP_565414.1| 40S ribosomal protein S4 (RPS4A) [A... 296 3e-79
gi|48376549|gb|AAH07308.2| RPS4X protein [Homo sapiens] 296 4e-79
gi|28630195|gb|AAN77886.1| ribosomal protein S4 [Myxine glutinosa] 295 6e-79
gi|50252099|dbj|BAD28085.1| putative ribosomal protein S4 [Oryza... 295 6e-79
gi|337930|gb|AAA36597.1| scar protein 295 7e-79
gi|49072080|ref|XP_400329.1| hypothetical protein UM02714.1 [Ust... 295 7e-79
gi|44967243|gb|AAS49567.1| ribosomal protein S4 [Latimeria chalu... 294 1e-78
gi|1350992|sp|P47837|RS4_CANAL 40S ribosomal protein S4 (S7) >gn... 293 2e-78
gi|6226700|sp|P51405|RS4_DICDI 40S ribosomal protein S4 >gnl|BL_... 292 6e-78
gi|47208976|emb|CAF90008.1| unnamed protein product [Tetraodon n... 290 2e-77
gi|38083861|ref|XP_123271.2| similar to ribosomal protein S4, X-... 286 3e-76
gi|38087174|ref|XP_357772.1| similar to ribosomal protein S4, X-... 286 4e-76
gi|17367482|sp|O81363|RS4_PRUAR 40S ribosomal protein S4 >gnl|BL... 285 6e-76
gi|37779112|gb|AAP20216.1| 40S ribosomal protein S4 [Pagrus major] 279 5e-74
gi|38100367|gb|EAA47504.1| hypothetical protein MG02747.4 [Magna... 278 9e-74
gi|46128673|ref|XP_388890.1| conserved hypothetical protein [Gib... 275 8e-73
gi|34915072|ref|NP_918883.1| putative ribosomal protein S4 [Oryz... 274 1e-72
gi|46439933|gb|EAK99245.1| hypothetical protein CaO19.3354 [Cand... 272 7e-72
gi|10177019|dbj|BAB10257.1| ribosomal protein S4 [Arabidopsis th... 271 1e-71
gi|47777385|gb|AAT38019.1| putative 40S ribosomal protein S4 [Or... 269 4e-71
gi|25294486|pir||C84551 probable ribosomal protein S4 [imported]... 269 6e-71
gi|49094940|ref|XP_408931.1| conserved hypothetical protein [Asp... 266 5e-70
gi|38086661|ref|XP_124905.2| similar to ribosomal protein S4 [Mu... 261 9e-69
gi|23508261|ref|NP_700930.1| ribosomal protein S4, putative [Pla... 256 4e-67
gi|37552053|ref|XP_065006.3| similar to ribosomal protein S4, X-... 256 5e-67
gi|2981290|gb|AAC38966.1| ribosomal protein S4 homolog [Trypanos... 245 9e-64
gi|1096035|prf||2110340A ribosomal protein S7 244 1e-63
gi|23478464|gb|EAA15546.1| ribosomal protein S4 X isoform [Plasm... 242 7e-63
gi|8953449|emb|CAB96734.1| 40S ribosomal protein S4, copy 1 [Lei... 241 1e-62
gi|29250433|gb|EAA41927.1| GLP_39_63499_62693 [Giardia lamblia A... 232 8e-60
gi|21313582|ref|NP_079681.1| RIKEN cDNA 1110033J19; EST AA407494... 231 1e-59
gi|2500489|sp|P55832|RS4_HORSE 40S ribosomal protein S4 >gnl|BL_... 230 2e-59
gi|3914909|sp|P79103|RS4_BOVIN 40S ribosomal protein S4 >gnl|BL_... 228 1e-58
gi|3123270|sp|P49398|RS4_ORYSA 40S ribosomal protein S4 (SCAR pr... 221 2e-56
gi|13812278|ref|NP_113396.1| 40S ribosomal protein S4 [Guillardi... 216 3e-55
gi|38047855|gb|AAR09830.1| similar to Drosophila melanogaster Rp... 216 3e-55
gi|34862838|ref|XP_220071.2| similar to ribosomal protein S4, X-... 210 2e-53
gi|47197900|emb|CAF89133.1| unnamed protein product [Tetraodon n... 208 9e-53
gi|47196669|emb|CAF89132.1| unnamed protein product [Tetraodon n... 206 4e-52
gi|32417786|ref|XP_329371.1| hypothetical protein ( ribosomal pr... 190 3e-47
gi|47935075|gb|AAT39884.1| ribosomal protein S4 [Branchiostoma b... 182 5e-45
gi|4432937|dbj|BAA21076.1| Y-chromosome linked ribosomal protein... 181 2e-44
gi|19173414|ref|NP_597217.1| 40S RIBOSOMAL PROTEIN S4 [Encephali... 158 1e-37
gi|15668645|ref|NP_247443.1| SSU ribosomal protein S4E [Methanoc... 155 7e-37
gi|15678046|ref|NP_275160.1| ribosomal protein S4 [Methanothermo... 154 3e-36
gi|14591522|ref|NP_143603.1| 30S ribosomal protein S4 [Pyrococcu... 152 1e-35
gi|17484249|ref|XP_066040.1| ribosomal protein S4-like [Homo sap... 150 2e-35
gi|11544432|emb|CAC17636.1| dJ843L14.2 (novel protein similar to... 150 2e-35
gi|14520545|ref|NP_126020.1| SSU ribosomal protein S4E [Pyrococc... 147 2e-34
gi|45358974|ref|NP_988531.1| SSU ribosomal protein S4E [Methanoc... 145 1e-33
gi|133944|sp|P14023|RS4E_METVA 30S ribosomal protein S4e >gnl|BL... 144 2e-33
gi|18978184|ref|NP_579541.1| SSU ribosomal protein S4E [Pyrococc... 144 2e-33
gi|27363136|gb|AAO11521.1| 40S ribosomal protein S4 [Chlamys far... 141 1e-32
gi|2133273|pir||S62681 ribosomal protein YS7 homolog - Emericell... 137 3e-31
gi|14600657|ref|NP_147175.1| 30S ribosomal protein S4 [Aeropyrum... 135 7e-31
gi|17380578|sp|Q9YF85|RS4E_AERPE 30S ribosomal protein S4e 135 7e-31
gi|20094656|ref|NP_614503.1| Ribosomal protein S4E [Methanopyrus... 126 4e-28
gi|2275282|gb|AAB63866.1| ribosomal protein S4 homolog [Schizosa... 119 9e-26
gi|20089954|ref|NP_616029.1| ribosomal protein S4e [Methanosarci... 115 1e-24
gi|21228238|ref|NP_634160.1| SSU ribosomal protein S4E [Methanos... 114 2e-24
gi|11499497|ref|NP_070738.1| SSU ribosomal protein S4E (rps4E) [... 113 4e-24
gi|18313980|ref|NP_560647.1| ribosomal protein S4 [Pyrobaculum a... 112 7e-24
gi|48838695|ref|ZP_00295635.1| COG1471: Ribosomal protein S4E [M... 110 3e-23
gi|2500490|sp|Q40941|RS4_CHLS6 40S ribosomal protein S4 >gnl|BL_... 110 3e-23
gi|41615262|ref|NP_963760.1| NEQ478 [Nanoarchaeum equitans Kin4-... 110 4e-23
gi|15897612|ref|NP_342217.1| SSU ribosomal protein S4E (rps4E) [... 103 3e-21
gi|16082261|ref|NP_394715.1| 30S RIBOSOMAL PROTEIN S4E [Thermopl... 102 7e-21
gi|17380573|sp|Q56230|RS4E_THEAC 30S ribosomal protein S4e 102 7e-21
gi|7491541|pir||T40012 hypothetical protein SPBC25H2.17c - fissi... 102 9e-21
gi|1272662|emb|CAA94808.1| ribosomal protein S4 [Homo sapiens] 98 2e-19
gi|7440145|pir||T04113 probable 40S ribosomal protein S4 - rice ... 96 1e-18
gi|13541168|ref|NP_110856.1| 30S ribosomal protein S4E [Thermopl... 94 4e-18
gi|48477724|ref|YP_023430.1| small subunit ribosomal protein S4E... 89 1e-16
gi|2275314|gb|AAB63882.1| 40S ribosomal protein S4 homolog [Schi... 89 1e-16
gi|3914911|sp|O05634|RS4E_SULAC 30S ribosomal protein S4e >gnl|B... 88 2e-16
gi|48852513|ref|ZP_00306699.1| COG1471: Ribosomal protein S4E [F... 86 7e-16
gi|133943|sp|P22510|RS4E_HALMA 30S ribosomal protein S4E (HS3) >... 81 2e-14
gi|15790644|ref|NP_280468.1| 30S ribosomal protein S4E; Rps4e [H... 79 8e-14
gi|1001943|gb|AAA76860.1| ribosomal protein S4 78 2e-13
gi|15920630|ref|NP_376299.1| 178aa long hypothetical 30S ribosom... 62 1e-08
gi|7440141|pir||S22607 ribosomal protein S4, cytosolic - African... 52 2e-05
gi|50365150|ref|YP_053575.1| riboflavin kinase [Mesoplasma floru... 42 0.019
gi|23015021|ref|ZP_00054811.1| COG5295: Autotransporter adhesin ... 40 0.072
gi|46445432|gb|EAL04701.1| hypothetical protein CaO19.12372 [Can... 39 0.12
gi|46445626|gb|EAL04894.1| hypothetical protein CaO19.4906 [Cand... 38 0.27
gi|47209666|emb|CAF95093.1| unnamed protein product [Tetraodon n... 37 0.36
gi|6324372|ref|NP_014442.1| Anchorage subunit of a-agglutinin of... 37 0.61
gi|50747964|ref|XP_421059.1| PREDICTED: similar to zinc finger p... 37 0.61
gi|22766827|gb|AAH37441.1| Similar to zinc finger protein 91 [Mu... 37 0.61
gi|16579828|ref|NP_444251.1| zinc finger protein 91 isoform 1; z... 37 0.61
gi|34785721|gb|AAH57323.1| Zfp91 protein [Mus musculus] 37 0.61
gi|25777701|ref|NP_739574.1| zinc finger protein 91 isoform 2; z... 37 0.61
gi|30353849|gb|AAH51743.1| Zinc finger protein 91, isoform 1 [Ho... 37 0.61
gi|15865601|gb|AAL09963.1| FKSG11 [Homo sapiens] 37 0.61
gi|50547897|ref|XP_501418.1| hypothetical protein [Yarrowia lipo... 37 0.61
gi|2137872|pir||I48724 zinc finger protein PZF - mouse >gnl|BL_O... 36 1.0
gi|1351000|sp|P49401|RS4_XENLA 40S RIBOSOMAL PROTEIN S4 (CLONE 4... 36 1.0
gi|6324467|ref|NP_014536.1| cell wall integrity and stress respo... 36 1.0
gi|2137870|pir||I48722 zinc finger protein - mouse (fragment) >g... 36 1.0
gi|19571553|emb|CAD27464.1| SPAPB15E9.01c [Schizosaccharomyces p... 35 1.4
gi|47226687|emb|CAG07846.1| unnamed protein product [Tetraodon n... 35 1.4
gi|48474505|sp|Q8TFG9|YL61_SCHPO Hypothetical serine/threonine-r... 35 1.4
gi|50420277|ref|XP_458671.1| unnamed protein product [Debaryomyc... 35 1.8
gi|30172014|gb|AAP20604.1| protein kinase C [Pichia pastoris] 35 1.8
gi|39590899|emb|CAE58679.1| Hypothetical protein CBG01853 [Caeno... 35 2.3
gi|4589850|dbj|BAA76901.1| choriogenin Hminor [Oryzias latipes] 35 2.3
gi|45190304|ref|NP_984558.1| AEL302Wp [Eremothecium gossypii] >g... 34 3.0
gi|32189726|ref|NP_859456.1| hypothetical protein Chr3_0240 [Lei... 34 3.0
gi|7511432|pir||T21460 hypothetical protein ZK945.10 - Caenorhab... 34 4.0
gi|48429243|sp|P87179|YB1E_SCHPO Serine-rich protein C30B4.01c p... 34 4.0
gi|19112318|ref|NP_595526.1| hypothetical protein [Schizosacchar... 34 4.0
gi|7491580|pir||T40167 hypothetical protein SPBC30B4.01c - fissi... 34 4.0
gi|17535137|ref|NP_496184.1| location Of Vulva defective LOV-1, ... 34 4.0
gi|6473880|dbj|BAA87194.1| Hypothetical protein [Schizosaccharom... 34 4.0
gi|49120840|ref|XP_412378.1| hypothetical protein AN8241.2 [Aspe... 33 5.2
gi|554270|gb|AAA40072.1| ribosomal protein S4 33 5.2
gi|39587810|emb|CAE67828.1| Hypothetical protein CBG13411 [Caeno... 33 5.2
gi|6324046|ref|NP_014116.1| cell wall integrity and stress respo... 33 5.2
gi|50286217|ref|XP_445537.1| unnamed protein product [Candida gl... 33 5.2
gi|23114555|ref|ZP_00099851.1| COG3829: Transcriptional regulato... 33 6.7
gi|6322611|ref|NP_012685.1| Delayed Anaerobic Gene; Dan4p [Sacch... 33 6.7
gi|25011571|ref|NP_735966.1| Unknown [Streptococcus agalactiae N... 33 6.7
gi|41147656|ref|XP_168583.4| similar to intestinal membrane muci... 33 6.7
gi|25989119|gb|AAK53449.1| unknown [Streptomyces aureofaciens] 33 6.7
gi|47203908|emb|CAG14189.1| unnamed protein product [Tetraodon n... 33 6.7
gi|17221106|gb|AAK61480.1| glycoprotein gp2 [Equine herpesvirus 1] 33 6.7
gi|38076381|ref|XP_204827.3| similar to mastigoneme-like protein... 33 8.8
gi|6688357|emb|CAB65669.1| glycoprotein G-2 [Human herpesvirus 2... 33 8.8
gi|6688363|emb|CAB65672.1| glycoprotein G-2 [Human herpesvirus 2] 33 8.8
gi|6688361|emb|CAB65671.1| glycoprotein G-2 [Human herpesvirus 2] 33 8.8
gi|1168933|sp|P40954|CHI3_CANAL Chitinase 3 precursor >gnl|BL_OR... 33 8.8
gi|39590335|emb|CAE66074.1| Hypothetical protein CBG11288 [Caeno... 33 8.8
gi|29655151|ref|NP_820843.1| DNA topoisomerase IV, A subunit [Co... 33 8.8
gi|28378774|ref|NP_785666.1| extracellular protein, gamma-D-glut... 33 8.8
gi|46137839|ref|XP_390611.1| hypothetical protein FG10435.1 [Gib... 33 8.8
gi|25026893|ref|NP_736947.1| 5'-nucleotidase [Corynebacterium ef... 33 8.8
>gi|17543386|ref|NP_501103.1| ribosomal protein S4E and KOW (29.0
kD) (4H848) [Caenorhabditis elegans]
gi|7331881|gb|AAF60569.1| Hypothetical protein Y43B11AR.4
[Caenorhabditis elegans]
Length = 259
Score = 493 bits (1269), Expect = e-138
Identities = 248/259 (95%), Positives = 248/259 (95%)
Frame = -1
Query: 780 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEA 601
MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEA
Sbjct: 1 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEA 60
Query: 600 KKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADF 421
KKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADF
Sbjct: 61 KKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADF 120
Query: 420 KLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLA 241
KLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLA
Sbjct: 121 KLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLA 180
Query: 240 YVTXXXXXXXXXXXGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTG 61
YVT GHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTG
Sbjct: 181 YVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTG 240
Query: 60 AGIRLSIAEERDKRMAQKH 4
AGIRLSIAEERDKRMAQKH
Sbjct: 241 AGIRLSIAEERDKRMAQKH 259