Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= W06E11_3
         (591 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17555496|ref|NP_497228.1| putative nuclear protein (3B259) [C...   347   7e-95
gi|39586136|emb|CAE69212.1| Hypothetical protein CBG15252 [Caeno...   251   5e-66
gi|23508941|ref|NP_701609.1| hypothetical protein [Plasmodium fa...    39   0.055
gi|47209824|emb|CAF91228.1| unnamed protein product [Tetraodon n...    34   2.3
gi|32405850|ref|XP_323538.1| hypothetical protein [Neurospora cr...    33   3.9
gi|21622344|emb|CAD37044.1| related to chromatin assembly comple...    33   3.9
gi|7438090|pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1...    32   8.8
gi|15223583|ref|NP_176058.1| expressed protein [Arabidopsis thal...    32   8.8
gi|16648923|gb|AAL24313.1| Unknown protein [Arabidopsis thaliana]      32   8.8
gi|38076392|ref|XP_127780.3| RIKEN cDNA 4930570G11 [Mus musculus]      32   8.8
gi|34868130|ref|XP_217046.2| similar to RIKEN cDNA E330036L07 [R...    32   8.8


>gi|17555496|ref|NP_497228.1| putative nuclear protein (3B259)
           [Caenorhabditis elegans]
 gi|25375579|pir||F88382 protein W06E11.2 [imported] -
           Caenorhabditis elegans
 gi|13559653|gb|AAK29862.1| Hypothetical protein W06E11.2
           [Caenorhabditis elegans]
          Length = 196

 Score =  347 bits (891), Expect = 7e-95
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +1

Query: 1   MGKKRKHQDSDSEQSGKRVKKVEEARNGVADMTIDESSDFQVFLIKKPIGVSLEDLEALK 180
           MGKKRKHQDSDSEQSGKRVKKVEEARNGVADMTIDESSDFQVFLIKKPIGVSLEDLEALK
Sbjct: 1   MGKKRKHQDSDSEQSGKRVKKVEEARNGVADMTIDESSDFQVFLIKKPIGVSLEDLEALK 60

Query: 181 WSNDEEVLTKTKLKTESGVFRAIVAPKSKKERMVHIPAFREREEADSKNIKAQSFVTGAI 360
           WSNDEEVLTKTKLKTESGVFRAIVAPKSKKERMVHIPAFREREEADSKNIKAQSFVTGAI
Sbjct: 61  WSNDEEVLTKTKLKTESGVFRAIVAPKSKKERMVHIPAFREREEADSKNIKAQSFVTGAI 120

Query: 361 TILPQEVKPKVLGGFIYXXXXXXXXXXXXXXXGLKKIKKTAILDLESRQQRNKAYGTTTE 540
           TILPQEVKPKVLGGFIY               GLKKIKKTAILDLESRQQRNKAYGTTTE
Sbjct: 121 TILPQEVKPKVLGGFIYEEGEEPVEGSSEVHPGLKKIKKTAILDLESRQQRNKAYGTTTE 180

Query: 541 GDGKPRKLANIIEKMN 588
           GDGKPRKLANIIEKMN
Sbjct: 181 GDGKPRKLANIIEKMN 196




[DB home][top]