Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= R119_2
         (1752 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17508657|ref|NP_490724.1| RNA-binding region RNP-1 (1A841) [C...  1062   0.0
gi|39579990|emb|CAE74203.1| Hypothetical protein CBG21881 [Caeno...   514   e-144
gi|39585865|emb|CAE61279.1| Hypothetical protein CBG05098 [Caeno...   504   e-141
gi|41053977|ref|NP_956219.1| Similar to RIKEN cDNA 1500011D06 ge...    51   8e-05
gi|41351458|gb|AAH65641.1| Zgc:77304 protein [Danio rerio]             50   2e-04
gi|50760097|ref|XP_417899.1| PREDICTED: similar to Putative RNA-...    45   0.004
gi|39588915|emb|CAE69545.1| Hypothetical protein CBG15757 [Caeno...    44   0.016
gi|7023641|dbj|BAA92036.1| unnamed protein product [Homo sapiens]      41   0.10
gi|47682782|gb|AAH70262.1| RNA binding motif protein 7 [Homo sap...    41   0.10
gi|9994185|ref|NP_057174.1| RNA binding motif protein 7 [Homo sa...    41   0.10
gi|34863338|ref|XP_236212.2| similar to RIKEN cDNA 1500011D06 [R...    40   0.18
gi|3218484|emb|CAA19639.1| EG:125H10.1 [Drosophila melanogaster]       40   0.18
gi|45549293|ref|NP_569839.2| CG3777-PB [Drosophila melanogaster]...    40   0.18
gi|27753952|ref|NP_659197.2| RNA binding motif protein 7 [Mus mu...    39   0.30
gi|32493337|gb|AAH54774.1| RNA binding motif protein 7 [Mus musc...    39   0.30
gi|102215|pir||S13497 cAMP-binding protein - slime mold (Dictyos...    39   0.40
gi|115573|sp|P19198|CAP1_DICDI cAMP binding protein CABP1A/CABP1...    39   0.40
gi|28828721|gb|AAO51316.1| similar to Dictyostelium discoideum (...    39   0.40
gi|31197959|ref|XP_307927.1| ENSANGP00000021860 [Anopheles gambi...    39   0.52
gi|28828259|gb|AAO50936.1| similar to Dictyostelium discoideum (...    39   0.52
gi|47218803|emb|CAG02788.1| unnamed protein product [Tetraodon n...    38   0.67
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plu...    38   0.88
gi|27735168|sp|P34122|CAP2_DICDI CABP1-related protein p31/p34 >...    37   1.1
gi|167672|gb|AAA33169.1| CABP1-related polypeptide                     37   1.1
gi|39585711|emb|CAE59913.1| Hypothetical protein CBG03398 [Caeno...    37   1.1
gi|50553814|ref|XP_504318.1| hypothetical protein [Yarrowia lipo...    37   1.5
gi|48104057|ref|XP_395705.1| similar to CG18497-PA [Apis mellifera]    37   1.5
gi|46105414|ref|XP_380511.1| hypothetical protein FG00335.1 [Gib...    37   1.5
gi|6321260|ref|NP_011337.1| mRNA binding protein, specifically b...    37   1.5
gi|794145|emb|CAA58660.1| MPT5=HTR1 [Saccharomyces cerevisiae]         37   1.5
gi|48835688|ref|ZP_00292687.1| COG0457: FOG: TPR repeat [Thermob...    37   1.5
gi|730058|sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 pro...    37   1.5
gi|45384000|ref|NP_990596.1| nucleolin; protein C23 [Gallus gall...    37   2.0
gi|18495789|emb|CAC87892.1| surface protein [Theileria annulata]       37   2.0
gi|9978670|sp|P57052|RBMB_HUMAN Putative RNA-binding protein 11 ...    36   2.6
gi|23491026|gb|EAA22663.1| Drosophila melanogaster CG10354 gene ...    36   2.6
gi|4105681|gb|AAD02494.1| unknown [Oryza sativa]                       36   2.6
gi|50553830|ref|XP_504326.1| hypothetical protein [Yarrowia lipo...    36   2.6
gi|4096175|gb|AAD10370.1| early embryogenesis protein [Oryza sat...    36   2.6
gi|17555678|ref|NP_499686.1| RNA binding motif protein like (3O1...    35   4.4
gi|26333183|dbj|BAC30309.1| unnamed protein product [Mus musculus]     35   4.4
gi|480602|pir||S37085 polyadenylate-binding protein - fern (Anem...    35   4.4
gi|34867444|ref|XP_221731.2| similar to RNA binding motif protei...    35   4.4
gi|39930581|ref|NP_938044.1| RNA binding motif protein 11 [Mus m...    35   4.4
gi|45548056|ref|ZP_00188092.1| COG0500: SAM-dependent methyltran...    35   4.4
gi|27804344|gb|AAO22235.1| nucleolin [Cyprinus carpio]                 35   5.7
gi|34898566|ref|NP_910629.1| hypothetical protein [Oryza sativa ...    35   7.5
gi|18143624|dbj|BAB79696.1| vitellogenin 1 [Oryzias latipes]           35   7.5
gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]        34   9.7
gi|50260599|gb|EAL23252.1| hypothetical protein CNBA3680 [Crypto...    34   9.7
gi|46125673|ref|XP_387390.1| hypothetical protein FG07214.1 [Gib...    34   9.7
gi|46121145|ref|XP_385127.1| hypothetical protein FG04951.1 [Gib...    34   9.7
gi|30695172|ref|NP_191591.2| expressed protein [Arabidopsis thal...    34   9.7
gi|47210698|emb|CAF96067.1| unnamed protein product [Tetraodon n...    34   9.7


>gi|17508657|ref|NP_490724.1| RNA-binding region RNP-1 (1A841)
            [Caenorhabditis elegans]
 gi|25375616|pir||G87719 protein R119.7 [imported] - Caenorhabditis
            elegans
 gi|3133013|gb|AAC16433.1| Hypothetical protein R119.7 [Caenorhabditis
            elegans]
          Length = 583

 Score = 1062 bits (2746), Expect = 0.0
 Identities = 521/583 (89%), Positives = 521/583 (89%)
 Frame = +1

Query: 1    MNGQADRCDRTAYVSGLQPTISDIELFEVFNRVAHVEKVIVRNGAARHALIVFKTVQGLY 180
            MNGQADRCDRTAYVSGLQPTISDIELFEVFNRVAHVEKVIVRNGAARHALIVFKTVQGLY
Sbjct: 1    MNGQADRCDRTAYVSGLQPTISDIELFEVFNRVAHVEKVIVRNGAARHALIVFKTVQGLY 60

Query: 181  QVLVNFQGTTLHGRQLHIRPLRESSHANSEAISTMFEKVKHQGNSGNSSYRQEHSFPEYR 360
            QVLVNFQGTTLHGRQLHIRPLRESSHANSEAISTMFEKVKHQGNSGNSSYRQEHSFPEYR
Sbjct: 61   QVLVNFQGTTLHGRQLHIRPLRESSHANSEAISTMFEKVKHQGNSGNSSYRQEHSFPEYR 120

Query: 361  NQNPQASSYLPPNPRGHRNSTGCFNXXXXXXXXXXXXXXYNQYNQNKYPNETYPGMTLFD 540
            NQNPQASSYLPPNPRGHRNSTGCFN              YNQYNQNKYPNETYPGMTLFD
Sbjct: 121  NQNPQASSYLPPNPRGHRNSTGCFNGGGGGYGRRRSAGGYNQYNQNKYPNETYPGMTLFD 180

Query: 541  NHPVQQYSGFNPIDFRFDDYVEGAKRFDNLANLIRSSTPTDPFANYQKPCEXXXXXXXXX 720
            NHPVQQYSGFNPIDFRFDDYVEGAKRFDNLANLIRSSTPTDPFANYQKPCE
Sbjct: 181  NHPVQQYSGFNPIDFRFDDYVEGAKRFDNLANLIRSSTPTDPFANYQKPCESTSTSRSRT 240

Query: 721  XXAKDQKHGPPTWKMELQIKKDDXXXXXXXXXTTGQKLSPXXXXXXXXXXXXSEQNADEV 900
              AKDQKHGPPTWKMELQIKKDD         TTGQKLSP            SEQNADEV
Sbjct: 241  NSAKDQKHGPPTWKMELQIKKDDHHHAGGGAATTGQKLSPQQFLAQIAQRQQSEQNADEV 300

Query: 901  AKKKRPNLSVINPSLFYEQYPRTSSPVVYASKSKPSGHYDDKIASPHDPAVLAYSRLRVP 1080
            AKKKRPNLSVINPSLFYEQYPRTSSPVVYASKSKPSGHYDDKIASPHDPAVLAYSRLRVP
Sbjct: 301  AKKKRPNLSVINPSLFYEQYPRTSSPVVYASKSKPSGHYDDKIASPHDPAVLAYSRLRVP 360

Query: 1081 QSAFDSLSPIDTDNCSFITKHLGPTTGVKRDLTNDELSDMIVSTGNLRINPTNIDHHDEP 1260
            QSAFDSLSPIDTDNCSFITKHLGPTTGVKRDLTNDELSDMIVSTGNLRINPTNIDHHDEP
Sbjct: 361  QSAFDSLSPIDTDNCSFITKHLGPTTGVKRDLTNDELSDMIVSTGNLRINPTNIDHHDEP 420

Query: 1261 APWSPLKRLRAESGSLSTAQVASPEFSPIKPKTMEFHETEDDVFETGPPPTYLSEGNENA 1440
            APWSPLKRLRAESGSLSTAQVASPEFSPIKPKTMEFHETEDDVFETGPPPTYLSEGNENA
Sbjct: 421  APWSPLKRLRAESGSLSTAQVASPEFSPIKPKTMEFHETEDDVFETGPPPTYLSEGNENA 480

Query: 1441 EKKCVEQPKINYDDINNSRLPSNSHSAAPNSEKKHFVFPEYPMCRHSSVPSIAHLVGDLS 1620
            EKKCVEQPKINYDDINNSRLPSNSHSAAPNSEKKHFVFPEYPMCRHSSVPSIAHLVGDLS
Sbjct: 481  EKKCVEQPKINYDDINNSRLPSNSHSAAPNSEKKHFVFPEYPMCRHSSVPSIAHLVGDLS 540

Query: 1621 DFCPHATADEKMLLDEASSIIENXXXXXXXXXXXXXXXXMLQI 1749
            DFCPHATADEKMLLDEASSIIEN                MLQI
Sbjct: 541  DFCPHATADEKMLLDEASSIIENTTPAVSTAPAAAPGATMLQI 583




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