Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= R10E9_2
         (780 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17554552|ref|NP_497798.1| putative protein (28.6 kD) (3F52) [...   440   e-122
gi|17554516|ref|NP_497889.1| putative protein family member (28....   342   4e-93
gi|33589131|emb|CAE45044.1| Hypothetical protein F17C8.7 [Caenor...   338   8e-92
gi|17553072|ref|NP_497971.1| putative protein family member, wit...   338   8e-92
gi|17555236|ref|NP_497950.1| putative protein family member (3F7...   338   1e-91
gi|39583315|emb|CAE60107.1| Hypothetical protein CBG03643 [Caeno...   328   6e-89
gi|630734|pir||S43597 coiled-coil protein homolog R07E5.6 - Caen...   246   5e-64
gi|34393863|dbj|BAC83543.1| putative pectinesterase [Oryza sativ...    35   1.8
gi|7512915|pir||T17342 hypothetical protein DKFZp586K1924.1 - hu...    34   3.0
gi|42760033|emb|CAE01390.1| tuber borchii white collar-1 [Tuber ...    34   3.0
gi|42659458|ref|XP_291729.4| RNA polymerase II transcription fac...    34   3.0
gi|49256603|gb|AAH73884.1| TAF3 protein [Homo sapiens]                 34   3.0
gi|28175603|gb|AAH45106.1| TAF3 protein [Homo sapiens]                 34   3.0
gi|38383015|gb|AAH62352.1| TAF3 protein [Homo sapiens]                 34   3.0
gi|13374079|emb|CAC34475.1| TAFII140 protein [Homo sapiens]            34   3.0
gi|20819438|ref|XP_129997.1| TAF3 RNA polymerase II, TATA box bi...    34   3.0
gi|50418767|ref|XP_457904.1| unnamed protein product [Debaryomyc...    34   4.0
gi|34876351|ref|XP_225559.2| similar to TAFII140 protein [Rattus...    34   4.0
gi|27659002|ref|XP_226431.1| similar to beta-1,3-galactosyltrans...    34   4.0
gi|16923730|gb|AAL31562.1| polyprotein [Human calicivirus SLV/Ho...    33   5.2
gi|11499379|ref|NP_070618.1| conserved hypothetical protein [Arc...    33   6.7
gi|46123247|ref|XP_386177.1| hypothetical protein FG06001.1 [Gib...    33   6.7
gi|21356645|ref|NP_648672.1| CG9028-PA [Drosophila melanogaster]...    33   6.7
gi|19923026|ref|NP_612066.1| CG12191-PA [Drosophila melanogaster...    33   8.8
gi|22971308|ref|ZP_00018280.1| hypothetical protein [Chloroflexu...    33   8.8


>gi|17554552|ref|NP_497798.1| putative protein (28.6 kD) (3F52)
           [Caenorhabditis elegans]
 gi|7506588|pir||T24147 hypothetical protein R10E9.2 -
           Caenorhabditis elegans
 gi|3879112|emb|CAA84666.1| Hypothetical protein R10E9.2
           [Caenorhabditis elegans]
          Length = 259

 Score =  440 bits (1132), Expect = e-122
 Identities = 222/259 (85%), Positives = 222/259 (85%)
 Frame = -1

Query: 780 MPCQSKKNPSEVHISSGRDLVQRTFVFSNTTGKDFLLKLITSSEAISFPTNIFRFPPSSH 601
           MPCQSKKNPSEVHISSGRDLVQRTFVFSNTTGKDFLLKLITSSEAISFPTNIFRFPPSSH
Sbjct: 1   MPCQSKKNPSEVHISSGRDLVQRTFVFSNTTGKDFLLKLITSSEAISFPTNIFRFPPSSH 60

Query: 600 RVIQFRVNSSKLSHWDKLNMSIKGYVMPIYAKNLKQFIDQKSTAGTQDQEAFSLAVKFTD 421
           RVIQFRVNSSKLSHWDKLNMSIKGYVMPIYAKNLKQFIDQKSTAGTQDQEAFSLAVKFTD
Sbjct: 61  RVIQFRVNSSKLSHWDKLNMSIKGYVMPIYAKNLKQFIDQKSTAGTQDQEAFSLAVKFTD 120

Query: 420 QYSAPQVLINLPGSATCIESMDHPVGIEELDTITAVNIEKDALTAAPIGNLMGFVEEYKR 241
           QYSAPQVLINLPGSATCIESMDHPVGIEELDTITAVNIEKDALTAAPIGNLMGFVEEYKR
Sbjct: 121 QYSAPQVLINLPGSATCIESMDHPVGIEELDTITAVNIEKDALTAAPIGNLMGFVEEYKR 180

Query: 240 RNTNKGGCWLSNYICGGEEEQKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
           RNTNKGGCWLSNYICGGEEEQKE
Sbjct: 181 RNTNKGGCWLSNYICGGEEEQKEKKSIRGASRRSSRSSKKSAKSAGSSSCRSQSRKKNKK 240

Query: 60  SQVNVCLEATPCGGSTIQA 4
           SQVNVCLEATPCGGSTIQA
Sbjct: 241 SQVNVCLEATPCGGSTIQA 259




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