Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= R107_7
         (825 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17554662|ref|NP_499003.1| putative nuclear protein (31.4 kD) ...   491   e-138
gi|17554660|ref|NP_499004.1| putative nuclear protein (31.1 kD) ...   479   e-134
gi|345363|pir||S30875 hypothetical protein R107.5 - Caenorhabdit...   470   e-131
gi|39585028|emb|CAE62679.1| Hypothetical protein CBG06824 [Caeno...   292   7e-78
gi|29421166|dbj|BAA20760.2| KIAA0300 [Homo sapiens]                    36   0.89
gi|30061507|ref|NP_835260.1| PDZ domain containing 3 isoform a; ...    36   0.89
gi|30061509|ref|NP_055837.2| PDZ domain containing 3 isoform b; ...    36   1.2
gi|12751452|gb|AAK07661.1| PDZ domain-containing protein AIPC [H...    36   1.2
gi|46130163|ref|ZP_00164915.2| COG1543: Uncharacterized conserve...    35   1.5
gi|23612741|ref|NP_704280.1| hypothetical protein [Plasmodium fa...    35   2.0
gi|12621106|ref|NP_075229.1| PAPIN [Rattus norvegicus] >gnl|BL_O...    35   2.0
gi|49112485|ref|XP_411882.1| hypothetical protein AN7745.2 [Aspe...    35   2.6
gi|23613547|ref|NP_704568.1| hypothetical protein [Plasmodium fa...    35   2.6
gi|38102603|gb|EAA49422.1| hypothetical protein MG01080.4 [Magna...    35   2.6
gi|4530367|gb|AAD22006.1| major outer membrane protein; OprF [Ps...    34   3.4
gi|48731955|ref|ZP_00265699.1| COG2885: Outer membrane protein a...    34   3.4
gi|37704604|gb|AAR01574.1| OprF [Pseudomonas sp. MFY32]                34   3.4
gi|37704602|gb|AAR01573.1| OprF [Pseudomonas sp. MFY31]                34   3.4
gi|37704636|gb|AAR01590.1| OprF [Pseudomonas sp. MFY80] >gnl|BL_...    34   3.4
gi|37704676|gb|AAR01610.1| OprF [Pseudomonas sp. MFY315]               34   3.4
gi|37704660|gb|AAR01602.1| OprF [Pseudomonas sp. MFY160]               34   3.4
gi|37704638|gb|AAR01591.1| OprF [Pseudomonas sp. MFY81] >gnl|BL_...    34   3.4
gi|37704658|gb|AAR01601.1| OprF [Pseudomonas sp. MFY152] >gnl|BL...    34   3.4
gi|37704608|gb|AAR01576.1| OprF [Pseudomonas sp. MFY52] >gnl|BL_...    34   3.4
gi|37704644|gb|AAR01594.1| OprF [Pseudomonas sp. MFY107]               34   3.4
gi|37704606|gb|AAR01575.1| OprF [Pseudomonas sp. MFY33]                34   3.4
gi|37704626|gb|AAR01585.1| OprF [Pseudomonas sp. MFY71]                34   3.4
gi|4530365|gb|AAD22005.1| major outer membrane protein; OprF [Ps...    34   3.4
gi|37704652|gb|AAR01598.1| OprF [Pseudomonas sp. MFY140]               34   4.4
gi|20867687|ref|XP_122131.1| nascent polypeptide-associated comp...    33   5.7
gi|16805029|ref|NP_473058.1| hypothetical protein [Plasmodium fa...    33   5.7
gi|27710456|ref|XP_213821.1| similar to alpha NAC/1.9.2. protein...    33   5.7
gi|7513740|pir||T30826 nascent polypeptide-associated complex al...    33   5.7
gi|49109737|ref|XP_411693.1| predicted protein [Aspergillus nidu...    33   5.7
gi|15221816|ref|NP_175846.1| 3'-5' exonuclease domain-containing...    33   7.5
gi|5031931|ref|NP_005585.1| nascent-polypeptide-associated compl...    33   7.5
gi|32413987|ref|XP_327473.1| predicted protein [Neurospora crass...    33   7.5
gi|42539128|gb|AAS18585.1| lef-8 [Neodiprion sertifer nucleopoly...    33   9.8
gi|13358870|dbj|BAB33175.1| envelope protein [Feline foamy virus]      33   9.8
gi|50804055|ref|XP_424297.1| PREDICTED: similar to Hypothetical ...    33   9.8
gi|119421|sp|P14351|ENV_FOAMV ENV polyprotein (Coat polyprotein)...    33   9.8
gi|9629261|ref|NP_044451.1| envelope protein [Human spumaretrovi...    33   9.8
gi|48843615|ref|YP_025188.1| late expression factor-8; lef-8 [Ne...    33   9.8
gi|37704678|gb|AAR01611.1| OprF [Pseudomonas sp. MFY338]               33   9.8
gi|9629130|ref|NP_044281.1| env polyprotein [Human foamy virus] ...    33   9.8
gi|50420597|ref|XP_458835.1| unnamed protein product [Debaryomyc...    33   9.8


>gi|17554662|ref|NP_499003.1| putative nuclear protein (31.4 kD)
           (3K142) [Caenorhabditis elegans]
 gi|5824564|emb|CAB54285.1| Hypothetical protein R107.5b
           [Caenorhabditis elegans]
          Length = 274

 Score =  491 bits (1264), Expect = e-138
 Identities = 246/274 (89%), Positives = 246/274 (89%)
 Frame = -1

Query: 825 MTQLTXXXXXXXXXXXNLHQPYNFNSHQPPEENHYYVREPNGKRPFPVEFELDMEYVPRT 646
           MTQLT           NLHQPYNFNSHQPPEENHYYVREPNGKRPFPVEFELDMEYVPRT
Sbjct: 1   MTQLTNFSESFSNQNSNLHQPYNFNSHQPPEENHYYVREPNGKRPFPVEFELDMEYVPRT 60

Query: 645 KRRFDKISACLENFSISNDKPSPINICRESSSDEEMDEVYDDSNFDQCTESTSIPLVVEP 466
           KRRFDKISACLENFSISNDKPSPINICRESSSDEEMDEVYDDSNFDQCTESTSIPLVVEP
Sbjct: 61  KRRFDKISACLENFSISNDKPSPINICRESSSDEEMDEVYDDSNFDQCTESTSIPLVVEP 120

Query: 465 DDEPAVAKKIRLDESIQRYFEKCRQGPIDFLPKPEKLKGNEMVIWQPRILVSPKNDFNMA 286
           DDEPAVAKKIRLDESIQRYFEKCRQGPIDFLPKPEKLKGNEMVIWQPRILVSPKNDFNMA
Sbjct: 121 DDEPAVAKKIRLDESIQRYFEKCRQGPIDFLPKPEKLKGNEMVIWQPRILVSPKNDFNMA 180

Query: 285 GRIQEIXXXXXDRVNEEIKTRIIENEGMIDEDTRNETTGIVELGTXXXXXXXXXXXXSPM 106
           GRIQEI     DRVNEEIKTRIIENEGMIDEDTRNETTGIVELGT            SPM
Sbjct: 181 GRIQEIDDEEEDRVNEEIKTRIIENEGMIDEDTRNETTGIVELGTGSDHSDIGSSWSSPM 240

Query: 105 ASPTGSSQIVELDPDSPNSLTNGSVTDEEMMEFE 4
           ASPTGSSQIVELDPDSPNSLTNGSVTDEEMMEFE
Sbjct: 241 ASPTGSSQIVELDPDSPNSLTNGSVTDEEMMEFE 274




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