Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= K07B1_6
         (105 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17562288|ref|NP_505416.1| putative protein (5J820) [Caenorhab...    67   2e-10


>gi|17562288|ref|NP_505416.1| putative protein (5J820)
           [Caenorhabditis elegans]
 gi|15145368|gb|AAK84539.1| Hypothetical protein K07B1.8
           [Caenorhabditis elegans]
          Length = 34

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 105 MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV 4
           MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV
Sbjct: 1   MSLARKEDASVARAIIRIVCDAVSFLKFRFLGVV 34


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.313    0.124    0.374

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,789,762
Number of Sequences: 1967186
Number of extensions: 859208
Number of successful extensions: 1441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 661,712,633
effective HSP length: 10
effective length of database: 642,040,773
effective search space used: 15408978552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)


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