Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= H27M09_4
(636 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17507947|ref|NP_491961.1| dna directed rna polymerase ii poly... 420 e-116
gi|39595790|emb|CAE67293.1| Hypothetical protein CBG12745 [Caeno... 411 e-114
gi|2135016|pir||A32618 DNA-directed RNA polymerase (EC 2.7.7.6) ... 343 2e-93
gi|28497750|ref|XP_282920.1| polymerase (RNA) II (DNA directed) ... 342 5e-93
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon n... 342 5e-93
gi|1173134|sp|P19388|RPB5_HUMAN DNA-directed RNA polymerase II 2... 342 5e-93
gi|50417194|gb|AAH77151.1| Unknown (protein for MGC:101098) [Dan... 340 1e-92
gi|14589951|ref|NP_002686.2| DNA directed RNA polymerase II poly... 340 1e-92
gi|46255774|gb|AAH34144.1| DNA directed RNA polymerase II polype... 340 1e-92
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis] 340 2e-92
gi|31235339|ref|XP_319221.1| ENSANGP00000006082 [Anopheles gambi... 339 3e-92
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens] 338 4e-92
gi|48124579|ref|XP_396561.1| similar to ENSANGP00000006082 [Apis... 337 1e-91
gi|19922004|ref|NP_610630.1| CG11979-PA [Drosophila melanogaster... 334 7e-91
gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus] 259 2e-68
gi|50761071|ref|XP_418224.1| PREDICTED: similar to DNA-directed ... 226 3e-58
gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase, putati... 225 5e-58
gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa (japonic... 211 1e-53
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase ... 201 1e-50
gi|23619569|ref|NP_705531.1| DNA-directed RNA polymerase 2, puta... 199 5e-50
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Crypto... 187 1e-46
gi|50311991|ref|XP_456027.1| unnamed protein product [Kluyveromy... 185 5e-46
gi|12229927|sp|Q9P4B9|RPB5_KLUMA DNA-directed RNA polymerases II... 184 9e-46
gi|45190642|ref|NP_984896.1| AER036Wp [Eremothecium gossypii] >g... 183 3e-45
gi|1680605|gb|AAC60556.1| RNA polymerase subunit [Saccharomyces ... 182 4e-45
gi|6319630|ref|NP_009712.1| RNA polymerase subunit, found in RNA... 182 4e-45
gi|50290313|ref|XP_447588.1| unnamed protein product [Candida gl... 180 2e-44
gi|49085552|ref|XP_404889.1| hypothetical protein AN0752.2 [Aspe... 177 2e-43
gi|50426767|ref|XP_461981.1| unnamed protein product [Debaryomyc... 176 3e-43
gi|19114099|ref|NP_593187.1| dna-directed rna polymerase i ii an... 171 1e-41
gi|44890007|emb|CAF32125.1| DNA-directed RNA polymerase, putativ... 162 4e-39
gi|50550027|ref|XP_502486.1| hypothetical protein [Yarrowia lipo... 160 2e-38
gi|32408361|ref|XP_324662.1| hypothetical protein [Neurospora cr... 157 1e-37
gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gib... 157 2e-37
gi|15242916|ref|NP_200606.1| eukaryotic rpb5 RNA polymerase subu... 154 1e-36
gi|13812223|ref|NP_113354.1| RNA polymerase I, II and III 24.3 k... 152 5e-36
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Cand... 149 4e-35
gi|38106680|gb|EAA52955.1| hypothetical protein MG06083.4 [Magna... 142 4e-33
gi|22902245|gb|AAH37681.1| Polr2e protein [Mus musculus] 133 3e-30
gi|49074664|ref|XP_401451.1| hypothetical protein UM03836.1 [Ust... 130 3e-29
gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabido... 126 3e-28
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domai... 125 7e-28
gi|15230206|ref|NP_191267.1| eukaryotic rpb5 RNA polymerase subu... 120 3e-26
gi|19718719|gb|AAL96367.1| Tcc44h21-2.4 [Trypanosoma cruzi] 119 4e-26
gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase ... 118 8e-26
gi|15227327|ref|NP_181665.1| eukaryotic rpb5 RNA polymerase subu... 116 4e-25
gi|15232524|ref|NP_191013.1| eukaryotic rpb5 RNA polymerase subu... 115 7e-25
gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus] 113 3e-24
gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Ence... 112 5e-24
gi|21842211|gb|AAM77735.1| RNA polymerase II subunit Rpb5a [Giar... 103 2e-21
gi|232954|gb|AAB19339.1| RNA polymerase II [Homo sapiens] 86 8e-16
gi|21842214|gb|AAM77736.1| RNA polymerase II subunit Rpb5b [Giar... 77 3e-13
gi|15669228|ref|NP_248033.1| DNA-directed RNA polymerase, subuni... 75 1e-12
gi|401022|sp|P31815|RPOH_THECE DNA-directed RNA polymerase subun... 73 4e-12
gi|15679061|ref|NP_276178.1| DNA-dependent RNA polymerase, subun... 73 5e-12
gi|14591330|ref|NP_143408.1| DNA-directed RNA polymerase subunit... 72 9e-12
gi|14520829|ref|NP_126304.1| DNA-directed RNA polymerase, subuni... 71 2e-11
gi|19718718|gb|AAL96366.1| Tcc44h21-2.3 [Trypanosoma cruzi] 71 2e-11
gi|18977937|ref|NP_579294.1| DNA-directed RNA polymerase subunit... 70 3e-11
gi|20140154|sp|Q976A3|RPOH_SULTO DNA-directed RNA polymerase sub... 66 6e-10
gi|15920467|ref|NP_376136.1| 99aa long hypothetical DNA-directed... 66 6e-10
gi|81114|pir||S04715 DNA-directed RNA polymerase (EC 2.7.7.6) ch... 66 6e-10
gi|1173165|sp|P11521|RPOH_SULAC DNA-directed RNA polymerase subu... 66 6e-10
gi|11499469|ref|NP_070710.1| DNA-directed RNA polymerase, subuni... 65 8e-10
gi|23822082|sp|Q8PUQ8|RPOH_METMA DNA-directed RNA polymerase sub... 64 3e-09
gi|21228376|ref|NP_634298.1| DNA-directed RNA polymerase subunit... 64 3e-09
gi|48840820|ref|ZP_00297746.1| COG2012: DNA-directed RNA polymer... 63 5e-09
gi|1173164|sp|P41559|RPOH_METVA DNA-directed RNA polymerase subu... 62 7e-09
gi|45358923|ref|NP_988480.1| RNA polymerase H/23 kD subunit [Met... 62 1e-08
gi|20090130|ref|NP_616205.1| DNA-directed RNA polymerase, subuni... 61 2e-08
gi|18312084|ref|NP_558751.1| DNA-directed RNA polymerase subunit... 60 3e-08
gi|14601676|ref|NP_148217.1| DNA-directed RNA polymerase, subuni... 60 3e-08
gi|15791391|ref|NP_281215.1| DNA-directed RNA polymerase subunit... 58 1e-07
gi|48852480|ref|ZP_00306666.1| COG2012: DNA-directed RNA polymer... 58 2e-07
gi|15897174|ref|NP_341779.1| DNA-directed RNA polymerase, subuni... 58 2e-07
gi|15228284|ref|NP_188290.1| expressed protein [Arabidopsis thal... 57 4e-07
gi|48477332|ref|YP_023038.1| DNA-directed RNA polymerase subunit... 56 7e-07
gi|13542014|ref|NP_111702.1| DNA-directed RNA polymerase, subuni... 55 1e-06
gi|14325447|dbj|BAB60351.1| DNA-directed RNA polymerase H [Therm... 55 1e-06
gi|548828|sp|Q03588|RPOH_THEAC DNA-directed RNA polymerase subun... 53 4e-06
gi|16081518|ref|NP_393869.1| DNA-DIRECTED RNA POLYMERASE CHAIN H... 53 4e-06
gi|41615289|ref|NP_963787.1| NEQ507 [Nanoarchaeum equitans Kin4-... 52 9e-06
gi|450707|emb|CAA50815.1| RNA polymerase subunit 23kDa [African ... 51 2e-05
gi|9628215|ref|NP_042801.1| RNA polymerase subunit 5 [African sw... 51 2e-05
gi|41719515|ref|ZP_00148401.1| COG2012: DNA-directed RNA polymer... 50 3e-05
gi|20094126|ref|NP_613973.1| DNA-directed RNA polymerase subunit... 49 6e-05
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoel... 48 1e-04
gi|7208597|gb|AAF40216.1| RNA polymerase subunit [Emericella nid... 45 0.001
gi|15079165|ref|NP_149917.1| 454R [Invertebrate iridescent virus... 41 0.022
gi|6324645|ref|NP_014714.1| Hypothetical ORF; Yor071cp [Saccharo... 33 4.6
gi|48868585|ref|ZP_00321900.1| hypothetical protein Hinf80100050... 33 4.6
gi|23129843|ref|ZP_00111666.1| COG0463: Glycosyltransferases inv... 33 4.6
gi|16273512|ref|NP_439765.1| unknown protein [Haemophilus influe... 33 4.6
gi|42631542|ref|ZP_00157080.1| COG5266: ABC-type Co2+ transport ... 33 4.6
gi|50758204|ref|XP_415808.1| PREDICTED: similar to SET and MYND ... 33 6.0
>gi|17507947|ref|NP_491961.1| dna directed rna polymerase ii
polypeptide e (24.3 kD) (1H427) [Caenorhabditis elegans]
gi|7206747|gb|AAF39906.1| Hypothetical protein H27M09.2
[Caenorhabditis elegans]
Length = 211
Score = 420 bits (1080), Expect = e-116
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +1
Query: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 180
MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 181 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 360
ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 361 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 540
DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180
Query: 541 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 633
ARYFGLRRGQVVKIIRPSETAGRYITYRLVV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211