Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F56D12_5
         (1137 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25148369|ref|NP_740971.1| Hyaluronan/mRNA binding protein (40...   339   6e-92
gi|39586979|emb|CAE62914.1| Hypothetical protein CBG07107 [Caeno...   269   8e-71
gi|50593074|gb|AAT79348.1| ALT-1 [Strongyloides ratti] >gnl|BL_O...    79   2e-13
gi|24649935|ref|NP_733083.1| CG11844-PB [Drosophila melanogaster...    67   1e-09
gi|24649937|ref|NP_733084.1| CG11844-PA [Drosophila melanogaster...    67   1e-09
gi|19335680|gb|AAL85609.1| putative mRNA binding protein [Aedes ...    64   5e-09
gi|14210646|gb|AAK55493.1| putative RNA-binding protein [Aedes a...    64   8e-09
gi|19335682|gb|AAL85610.1| putative mRNA binding protein [Aedes ...    64   8e-09
gi|19335678|gb|AAL85608.1| putative mRNA binding protein [Aedes ...    64   8e-09
gi|17737419|ref|NP_523572.1| CG4170-PA [Drosophila melanogaster]...    64   8e-09
gi|7661626|ref|NP_056455.1| PAI-1 mRNA-binding protein; chromodo...    57   8e-07
gi|48104211|ref|XP_392925.1| similar to CG4170-PA [Apis mellifera]     57   1e-06
gi|34855964|ref|XP_342706.1| hypothetical RNA binding protein RD...    56   1e-06
gi|15489106|gb|AAH13665.1| 1200009K13Rik protein [Mus musculus] ...    55   3e-06
gi|26353246|dbj|BAC40253.1| unnamed protein product [Mus musculus]     55   3e-06
gi|41151539|ref|XP_372227.1| similar to PAI-1 mRNA-binding prote...    55   3e-06
gi|31242647|ref|XP_321754.1| ENSANGP00000009724 [Anopheles gambi...    51   4e-05
gi|18088244|gb|AAH20555.1| PAI-RBP1 protein [Homo sapiens]             51   6e-05
gi|12803339|gb|AAH02488.1| PAI-RBP1 protein [Homo sapiens]             51   6e-05
gi|4929579|gb|AAD34050.1| CGI-55 protein [Homo sapiens]                50   7e-05
gi|14029171|gb|AAK51130.1| CGI-55 [Homo sapiens]                       50   7e-05
gi|28436832|gb|AAH46574.1| Rda288-prov protein [Xenopus laevis]        50   1e-04
gi|18041977|gb|AAL57768.1| hypothetical RNA binding protein RDA2...    50   1e-04
gi|12846595|dbj|BAB27229.1| unnamed protein product [Mus musculus]     49   3e-04
gi|47550733|ref|NP_999879.1| zgc:55489; wu:fj13e12 [Danio rerio]...    49   3e-04
gi|47216637|emb|CAG04835.1| unnamed protein product [Tetraodon n...    49   3e-04
gi|47575766|ref|NP_001001227.1| hypothetical protein MGC69561 [X...    47   6e-04
gi|12804377|gb|AAH03049.1| PAI-RBP1 protein [Homo sapiens] >gnl|...    44   0.005
gi|22760762|dbj|BAC11324.1| unnamed protein product [Homo sapiens]     44   0.005
gi|15235894|ref|NP_193416.1| nuclear RNA-binding protein (RGGA) ...    44   0.007
gi|47124885|gb|AAH70578.1| MGC81067 protein [Xenopus laevis]           43   0.012
gi|6492262|gb|AAF14242.1| nuclear RNA binding protein [Nicotiana...    43   0.012
gi|13385280|ref|NP_080090.1| PAI-1 mRNA-binding protein [Mus mus...    42   0.020
gi|24642125|ref|NP_573012.1| CG15031-PA [Drosophila melanogaster...    42   0.020
gi|32565040|ref|NP_740970.2| putative protein, with at least 2 t...    42   0.026
gi|21537052|gb|AAM61393.1| nuclear antigen homolog [Arabidopsis ...    42   0.034
gi|47215937|emb|CAF96339.1| unnamed protein product [Tetraodon n...    42   0.034
gi|7488863|pir||T12180 probable transcription factor - fava bean...    41   0.059
gi|39725276|emb|CAC85227.1| salt tolerance protein 1 [Beta vulga...    41   0.059
gi|39725278|emb|CAC85228.1| salt tolerance protein 2 [Beta vulga...    41   0.059
gi|26337141|dbj|BAC32255.1| unnamed protein product [Mus musculus]     41   0.059
gi|6492268|gb|AAF14245.1| nuclear RNA binding protein B [Spinaci...    40   0.10
gi|15238039|ref|NP_199532.1| nuclear RNA-binding protein, putati...    40   0.10
gi|21553991|gb|AAM63072.1| nuclear RNA binding protein A-like pr...    40   0.10
gi|37748539|gb|AAH59961.1| MGC68500 protein [Xenopus laevis]           39   0.22
gi|6492266|gb|AAF14244.1| nuclear RNA binding protein A [Spinaci...    39   0.22
gi|22902094|gb|AAN10161.1| IHABP [Takifugu rubripes]                   38   0.50
gi|24581877|ref|NP_723064.1| CG31916-PA [Drosophila melanogaster...    37   1.1
gi|46136781|ref|XP_390082.1| hypothetical protein FG09906.1 [Gib...    35   2.5
gi|15236552|ref|NP_193485.1| nuclear RNA-binding protein, putati...    35   4.2
gi|7460848|pir||T09313 immediate-early protein 4 - human herpesv...    34   7.2
gi|9633088|ref|NP_050199.1| immediate-early protein 4 [Human her...    34   7.2
gi|9628321|ref|NP_042912.1| immediate-early protein 4 [Human her...    34   7.2
gi|34910712|ref|NP_916703.1| putative nuclear RNA binding protei...    33   9.4
gi|29841370|gb|AAP06402.1| similar to GenBank Accession Number A...    33   9.4


>gi|25148369|ref|NP_740971.1| Hyaluronan/mRNA binding protein (40.4
            kD) (2B613) [Caenorhabditis elegans]
 gi|25354353|pir||D88042 protein F56D12.5 [imported] - Caenorhabditis
            elegans
 gi|2315676|gb|AAB66119.1| Vig (drosophila vasa intronic gene)
            ortholog protein 1, isoform a [Caenorhabditis elegans]
          Length = 378

 Score =  339 bits (870), Expect = 6e-92
 Identities = 198/378 (52%), Positives = 198/378 (52%)
 Frame = +1

Query: 1    MSTEYGCQVTNKFGLPSXXXXXXXXPRELIQKVSQIAAKKKEEKSXXXXXXXXXXXXXXX 180
            MSTEYGCQVTNKFGLPS        PRELIQKVSQIAAKKKEEKS
Sbjct: 1    MSTEYGCQVTNKFGLPSDDDDEYDDPRELIQKVSQIAAKKKEEKSVKPAQPVKPAAAPVA 60

Query: 181  XXXXXXXXXXXXXXXXXXXXXXXXPRDGERVSNENGDXXXXXXXXXXXXXXXXXXXXXXX 360
                                    PRDGERVSNENGD
Sbjct: 61   ATKTDGAAGRGRGGRGRGRGGAGRPRDGERVSNENGDRPQGENRRGGPRRGGERGAARPA 120

Query: 361  XXXXXXXXXXXXXXXXXPKQEVSFEDGQDTRAPXXXXXXXXXXXXXXXXXXXXXXXXXQF 540
                             PKQEVSFEDGQDTRAP                         QF
Sbjct: 121  GRGGRGGFTRENREGEEPKQEVSFEDGQDTRAPRRRGGFTLGGGPSGGRGGGRGGRGRQF 180

Query: 541  DRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTEPEVPRXXXXXXX 720
            DRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTEPEVPR
Sbjct: 181  DRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTEPEVPREKTAEEL 240

Query: 721  XXXXXXXXXXKQKTLKEFXXXXXXXXXXFNTRKAGEGAADTFGKLVPIKKEVIPDREEDE 900
                      KQKTLKEF          FNTRKAGEGAADTFGKLVPIKKEVIPDREEDE
Sbjct: 241  AYEAELAVLAKQKTLKEFKAAAKADAPKFNTRKAGEGAADTFGKLVPIKKEVIPDREEDE 300

Query: 901  VVVIHKAPRKQVLDISITFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            VVVIHKAPRKQVLDISITF
Sbjct: 301  VVVIHKAPRKQVLDISITFRNDRPERERNDRSERPQRGGPRGGGRGGGRGGQRQGGHGGR 360

Query: 1081 NNTPFNASDDAFPALGAK 1134
            NNTPFNASDDAFPALGAK
Sbjct: 361  NNTPFNASDDAFPALGAK 378




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