Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F56A3_3
(2670 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|25150098|ref|NP_740845.1| putative cytoplasmic protein, Nucle... 1712 0.0
gi|25150095|ref|NP_740844.1| putative cytoplasmic protein, Nucle... 1695 0.0
gi|39580111|emb|CAE56130.1| Hypothetical protein CBG23742 [Caeno... 1266 0.0
gi|30690738|ref|NP_198117.2| PWWP domain-containing protein [Ara... 39 0.85
gi|46156773|ref|ZP_00132214.2| COG5295: Autotransporter adhesin ... 37 1.9
gi|50793037|ref|XP_427931.1| PREDICTED: similar to SNARE protein... 36 4.2
gi|15644589|ref|NP_229642.1| beta transducin-related protein [Th... 36 4.2
gi|49085112|ref|XP_404703.1| hypothetical protein AN0566.2 [Aspe... 35 7.2
>gi|25150098|ref|NP_740845.1| putative cytoplasmic protein, Nuclear
Pore complex Protein NPP-6 (npp-6) [Caenorhabditis
elegans]
gi|18652599|gb|AAL77180.1| Nuclear pore complex protein protein 6,
isoform b [Caenorhabditis elegans]
Length = 889
Score = 1712 bits (4435), Expect = 0.0
Identities = 860/889 (96%), Positives = 860/889 (96%)
Frame = +1
Query: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 180
MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA
Sbjct: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 60
Query: 181 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 360
RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD
Sbjct: 61 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 120
Query: 361 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 540
GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED
Sbjct: 121 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 180
Query: 541 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 720
DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT
Sbjct: 181 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 240
Query: 721 MGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 900
MGEV TDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV
Sbjct: 241 MGEVGLLGKLLGGTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 300
Query: 901 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 1080
ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI
Sbjct: 301 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 360
Query: 1081 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 1260
VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL
Sbjct: 361 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 420
Query: 1261 DETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFAIQWKKGRVFTDFDWHSVRQF 1440
DETQDGELYNP YSMKRISFAIQWKKGRVFTDFDWHSVRQF
Sbjct: 421 DETQDGELYNPLTAALFSLSALFKSSSAKKTYSMKRISFAIQWKKGRVFTDFDWHSVRQF 480
Query: 1441 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 1620
TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD
Sbjct: 481 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 540
Query: 1621 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 1800
NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF
Sbjct: 541 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 600
Query: 1801 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 1980
WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI
Sbjct: 601 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 660
Query: 1981 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 2160
PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN
Sbjct: 661 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 720
Query: 2161 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 2340
AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN
Sbjct: 721 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 780
Query: 2341 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 2520
IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI
Sbjct: 781 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 840
Query: 2521 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRMEPARQEQV 2667
KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRMEPARQEQV
Sbjct: 841 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIRMEPARQEQV 889
>gi|25150095|ref|NP_740844.1| putative cytoplasmic protein, Nuclear
Pore complex Protein NPP-6 (npp-6) [Caenorhabditis
elegans]
gi|7504364|pir||T29146 hypothetical protein F56A3.3 - Caenorhabditis
elegans
gi|1707042|gb|AAB37803.1| Nuclear pore complex protein protein 6,
isoform a [Caenorhabditis elegans]
Length = 1562
Score = 1695 bits (4390), Expect = 0.0
Identities = 851/880 (96%), Positives = 851/880 (96%)
Frame = +1
Query: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 180
MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA
Sbjct: 1 MQPRPLFLNSNGAPYGGVFGSIHHCFVKFYIAKCQNMKLIMELVYGSEISFTDGFAIKPA 60
Query: 181 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 360
RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD
Sbjct: 61 RTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLWRAIGQKLFIEERSLLYSITD 120
Query: 361 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 540
GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED
Sbjct: 121 GSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFYARLHSKGHDTFSILARIKED 180
Query: 541 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 720
DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT
Sbjct: 181 DDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQLVIVTLGSYTESSDKHEEFT 240
Query: 721 MGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 900
MGEV TDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV
Sbjct: 241 MGEVGLLGKLLGGTDKRVSDACVMKNLRPTSGVTRERKISVQSDIVFAVTRDGWVQAWNV 300
Query: 901 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 1080
ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI
Sbjct: 301 ETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPMEPTETVYSIRAYSFDVDILLI 360
Query: 1081 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 1260
VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL
Sbjct: 361 VGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESESL 420
Query: 1261 DETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFAIQWKKGRVFTDFDWHSVRQF 1440
DETQDGELYNP YSMKRISFAIQWKKGRVFTDFDWHSVRQF
Sbjct: 421 DETQDGELYNPLTAALFSLSALFKSSSAKKTYSMKRISFAIQWKKGRVFTDFDWHSVRQF 480
Query: 1441 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 1620
TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD
Sbjct: 481 TSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVVFDTDIYPFDIVFRAVQIVSD 540
Query: 1621 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 1800
NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF
Sbjct: 541 NFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDRSIRLRLNAPQESQKTALKDF 600
Query: 1801 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 1980
WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI
Sbjct: 601 WWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDRMTFLGDNNTEFLEIISSENI 660
Query: 1981 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 2160
PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN
Sbjct: 661 PKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRERARLTNAKNGVAVVEDDNVEN 720
Query: 2161 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 2340
AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN
Sbjct: 721 AYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSFTQSVVSAN 780
Query: 2341 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 2520
IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI
Sbjct: 781 IRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLDI 840
Query: 2521 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 2640
KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR
Sbjct: 841 KIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 880
>gi|39580111|emb|CAE56130.1| Hypothetical protein CBG23742
[Caenorhabditis briggsae]
Length = 1530
Score = 1266 bits (3277), Expect = 0.0
Identities = 624/840 (74%), Positives = 713/840 (84%)
Frame = +1
Query: 121 MELVYGSEISFTDGFAIKPARTFVVNTNAPLHSNGFDVQPSAGVATFPHCSNYGDRIFLW 300
M+LVYGSEISF DGF+IKP+RT VNTNAPLHSN F+ +PS GVATFPH S+Y DR+FLW
Sbjct: 1 MDLVYGSEISFGDGFSIKPSRTLSVNTNAPLHSNIFEAKPSGGVATFPHSSHYADRVFLW 60
Query: 301 RAIGQKLFIEERSLLYSITDGSLCIDFTRTPIIPGTSITIFEEGVLCIVVPTASAIHRFY 480
RA+GQKL+IEERSLL+SI DGSLCIDFTRT IIPGTSITIFEEGVLCIVVPTASAIHRFY
Sbjct: 61 RAVGQKLYIEERSLLFSIADGSLCIDFTRTSIIPGTSITIFEEGVLCIVVPTASAIHRFY 120
Query: 481 ARLHSKGHDTFSILARIKEDDDFRRFRTSHSLSTPGRPIRASVTHHPSRNTISYCTAEGQ 660
A+L SKG DTFSILARIKE++DFRR++T H L+T GRPIRASVTHHP++NT+SYCTAEGQ
Sbjct: 121 AKLLSKGRDTFSILARIKEEEDFRRYQTCHVLTTQGRPIRASVTHHPTKNTVSYCTAEGQ 180
Query: 661 LVIVTLGSYTESSDKHEEFTMGEVXXXXXXXXXTDKRVSDACVMKNLRPTSGVTRERKIS 840
LV+V LGSYTE DKHEEFT+GEV TD+RVSDACVMKNLRP GV++ERK+S
Sbjct: 181 LVVVVLGSYTEPGDKHEEFTIGEVGLLGKLLGGTDRRVSDACVMKNLRPVGGVSKERKVS 240
Query: 841 VQSDIVFAVTRDGWVQAWNVETKKQLPSTIDLNNYFASDGKSLNRDLESADFEEEKSPME 1020
VQ+DIVFAVTRDGWVQAWNVET+KQL STIDLN +FASDGKS N S D + E
Sbjct: 241 VQADIVFAVTRDGWVQAWNVETRKQLASTIDLNKFFASDGKSFNYQDPSDDIDGPLE-QE 299
Query: 1021 PTETVYSIRAYSFDVDILLIVGCDLAVSGKSVGMRVHILKVSNDQIQHLQMFETSMSVDE 1200
P E YSI+AYSFDVD+LLIVGC++ + GKSVG RVHILK+S+DQ+QH+QMFET+MS DE
Sbjct: 300 PAELSYSIKAYSFDVDMLLIVGCEVRIGGKSVGTRVHILKMSDDQLQHMQMFETNMSADE 359
Query: 1201 RLVDLELIQNYFPSKESESLDETQDGELYNPXXXXXXXXXXXXXXXXXXXXYSMKRISFA 1380
RL D ELIQNYFP E++ LD TQ+ E YNP YSMKR+SFA
Sbjct: 360 RLEDFELIQNYFPPNEADELDTTQEFEDYNPRTAAQFSLTALFKSSSAKKNYSMKRVSFA 419
Query: 1381 IQWKKGRVFTDFDWHSVRQFTSPATTKEEPIGNTDEVEPAIERPYNLSADSSIETLIDVV 1560
IQWK G+VFT+FDWH VRQFTS AT K EP D+ A ERPYNLSADS++ETL+DV+
Sbjct: 420 IQWKAGKVFTEFDWHPVRQFTSAATKKGEPFA--DDGNSAPERPYNLSADSNVETLVDVI 477
Query: 1561 FDTDIYPFDIVFRAVQIVSDNFRGTLGQVRNNNWPELSKLVDTYLTSVEFNRKFQQKTDR 1740
FDTD+Y FDIV RA+QIVS+NFRG L Q+R+N+W EL+K+VD YL SVEFNRKFQ KTDR
Sbjct: 478 FDTDVYSFDIVLRAIQIVSENFRGALTQIRHNHWAELAKVVDAYLISVEFNRKFQLKTDR 537
Query: 1741 SIRLRLNAPQESQKTALKDFWWALLRACEELDFAARGAISLAPIQFCGDLRIMAVVHRDR 1920
SIRLRLNAPQESQ TA+KDFWWALLRACEELDFAARG I+L+P+Q GDL+IM V+H+DR
Sbjct: 538 SIRLRLNAPQESQTTAVKDFWWALLRACEELDFAARGTIALSPMQLAGDLKIMTVIHKDR 597
Query: 1921 MTFLGDNNTEFLEIISSENIPKQGNVEEKFRKLPNKHFIDLIEEASKFADRRVFLMNRER 2100
T LGDNN +FL IIS+ENIPK G+VEEKFRK+PNK F+DLI+EA+KFADRRV+LMN+ER
Sbjct: 598 FTILGDNNIDFLNIISTENIPKPGHVEEKFRKIPNKLFVDLIDEAAKFADRRVYLMNKER 657
Query: 2101 ARLTNAKNGVAVVEDDNVENAYDYDSDGRFINIKTALEGPIVKLAAAFVEASTFDNSKPF 2280
ARLTNAK+GV VV+DD +ENAYDYDSDGRFI IK+ALE IV L AFVEASTFDN KPF
Sbjct: 658 ARLTNAKHGVTVVDDDILENAYDYDSDGRFIQIKSALENSIVMLTTAFVEASTFDNGKPF 717
Query: 2281 EDPHPQIFGGSFTQSVVSANIRVSVESRVHFALTLQTLLNAITEKKSRAGAPSFGDVEAL 2460
EDP +FGGSF+QS+VSANIR SVESRVHFALTLQ LLNAITE+KSRAG PSFGDVEAL
Sbjct: 718 EDPCAHVFGGSFSQSLVSANIRKSVESRVHFALTLQALLNAITEQKSRAGVPSFGDVEAL 777
Query: 2461 SCELREIIRVYRELNEQLDIKIVQNGAKMSIGTWLTSDAEGLSMMKKEGGYGPHGYDEIR 2640
SCELREIIRVYRELNEQLD+KI++NGAKMSIGTWLTSD +GL+MMK+EGGYGP+GYDEIR
Sbjct: 778 SCELREIIRVYRELNEQLDLKILKNGAKMSIGTWLTSDNDGLAMMKREGGYGPNGYDEIR 837