Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F55F8_3
(1683 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17507645|ref|NP_491654.1| CBF1 interacting corepressor (65.8 ... 601 e-170
gi|39598251|emb|CAE68943.1| Hypothetical protein CBG14923 [Caeno... 397 e-109
gi|34855207|ref|XP_342449.1| similar to CBF1 interacting corepre... 184 7e-45
gi|47218097|emb|CAG09969.1| unnamed protein product [Tetraodon n... 184 7e-45
gi|13385336|ref|NP_080130.1| CBF1 interacting corepressor [Mus m... 184 7e-45
gi|40068059|ref|NP_004873.3| CBF1 interacting corepressor isofor... 183 1e-44
gi|27371134|gb|AAH38987.1| Similar to RIKEN cDNA 1700023B02 gene... 183 1e-44
gi|4160443|gb|AAD05243.1| CBF1 interacting corepressor CIR [Homo... 182 3e-44
gi|50800273|ref|XP_424117.1| PREDICTED: similar to CBF1 interact... 179 1e-43
gi|40068057|ref|NP_951057.1| CBF1 interacting corepressor isofor... 178 3e-43
gi|31212131|ref|XP_315050.1| ENSANGP00000011473 [Anopheles gambi... 176 2e-42
gi|24666524|ref|NP_649072.1| CG6843-PA [Drosophila melanogaster]... 171 5e-41
gi|21430152|gb|AAM50754.1| LD04179p [Drosophila melanogaster] 169 1e-40
gi|48099709|ref|XP_394929.1| similar to CG6843-PA [Apis mellifera] 150 1e-34
gi|7513297|pir||G01227 recepin - human >gnl|BL_ORD_ID|1482954 gi... 149 2e-34
gi|22328791|ref|NP_193654.2| zinc knuckle (CCHC-type) family pro... 57 1e-06
gi|18406480|ref|NP_566014.1| expressed protein [Arabidopsis thal... 49 4e-04
gi|21312952|ref|NP_080462.1| RIKEN cDNA 1300013D05 [Mus musculus... 48 6e-04
gi|50760762|ref|XP_418121.1| PREDICTED: similar to hypothetical ... 48 6e-04
gi|8923271|ref|NP_060218.1| hypothetical protein FLJ20291 [Homo ... 48 6e-04
gi|7487134|pir||T04440 hypothetical protein T18B16.160 - Arabido... 48 6e-04
gi|50304757|ref|XP_452334.1| unnamed protein product [Kluyveromy... 47 0.001
gi|34873510|ref|XP_340891.1| similar to RIKEN cDNA 1300013D05 [R... 47 0.001
gi|47087457|ref|NP_998627.1| zgc:55552 [Danio rerio] >gnl|BL_ORD... 47 0.002
gi|31211811|ref|XP_314879.1| ENSANGP00000012399 [Anopheles gambi... 45 0.004
gi|49903408|gb|AAH76804.1| AF549897-prov protein [Xenopus laevis] 45 0.004
gi|50370164|gb|AAH76727.1| Unknown (protein for MGC:81258) [Xeno... 45 0.004
gi|19112186|ref|NP_595394.1| hypothetical coiled-coil protein [S... 44 0.009
gi|7504317|pir||T29590 hypothetical protein F55F8.1 - Caenorhabd... 44 0.015
gi|47223966|emb|CAG06143.1| unnamed protein product [Tetraodon n... 44 0.015
gi|17508517|ref|NP_491658.1| PaTched Related (ptr-10) [Caenorhab... 44 0.015
gi|39581477|emb|CAE68007.1| Hypothetical protein CBG13620 [Caeno... 43 0.020
gi|17509345|ref|NP_493426.1| TBP-Associated transcription Factor... 42 0.058
gi|42407352|dbj|BAD08813.1| unknown protein [Oryza sativa (japon... 41 0.076
gi|47216160|emb|CAG10034.1| unnamed protein product [Tetraodon n... 41 0.099
gi|46229769|gb|EAK90587.1| Trp and Cys-rich motif similar to ste... 41 0.099
gi|15224842|ref|NP_181948.1| hypothetical protein [Arabidopsis t... 40 0.13
gi|50291219|ref|XP_448042.1| unnamed protein product [Candida gl... 40 0.13
gi|50732960|ref|XP_418845.1| PREDICTED: similar to Retinitis pig... 40 0.22
gi|42658271|ref|XP_379806.1| similar to RP9 protein [Homo sapiens] 39 0.29
gi|42718020|ref|NP_976033.1| retinitis pigmentosa 9 protein; Pim... 39 0.29
gi|46105082|ref|XP_380345.1| hypothetical protein FG00169.1 [Gib... 39 0.38
gi|34860458|ref|XP_343364.1| similar to PAP-1 [Rattus norvegicus] 39 0.49
gi|9055300|ref|NP_061209.1| retinitis pigmentosa 9 homolog; Pim-... 39 0.49
gi|49075692|ref|XP_401895.1| hypothetical protein UM04280.1 [Ust... 38 0.64
gi|49097252|ref|XP_410086.1| hypothetical protein AN5949.2 [Aspe... 38 0.84
gi|24581205|ref|NP_608705.1| CG2843-PA [Drosophila melanogaster]... 37 1.1
gi|46431884|gb|EAK91405.1| hypothetical protein CaO19.8868 [Cand... 37 1.1
gi|23619405|ref|NP_705367.1| hypothetical protein [Plasmodium fa... 37 1.9
gi|23490284|gb|EAA22098.1| Arabidopsis thaliana At4g37120/C7A10_... 36 2.4
gi|23619280|ref|NP_705242.1| hypothetical protein [Plasmodium fa... 36 3.2
gi|46227106|gb|EAK88056.1| hypothetical protein cgd5_2140 [Crypt... 36 3.2
gi|50747906|ref|XP_421040.1| PREDICTED: similar to BC026645 prot... 35 4.2
gi|39722379|emb|CAE84414.1| Cwc25 protein [Kluyveromyces lactis] 35 4.2
gi|1419220|emb|CAA65618.1| D2145 [Saccharomyces cerevisiae] 34 9.3
gi|50258351|gb|EAL21040.1| hypothetical protein CNBD4160 [Crypto... 34 9.3
>gi|17507645|ref|NP_491654.1| CBF1 interacting corepressor (65.8 kD)
(1G222) [Caenorhabditis elegans]
gi|7504320|pir||T29586 hypothetical protein F55F8.4 - Caenorhabditis
elegans
gi|1707048|gb|AAB37808.1| Hypothetical protein F55F8.4
[Caenorhabditis elegans]
Length = 560
Score = 601 bits (1549), Expect = e-170
Identities = 336/560 (60%), Positives = 336/560 (60%)
Frame = -1
Query: 1683 MGKGFQNFMSKKDFHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEILNNKALLG 1504
MGKGFQNFMSKKDFHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEILNNKALLG
Sbjct: 1 MGKGFQNFMSKKDFHPSAFRNLKMVWEARQKKSLEDKRQEELRVAYEKEQEILNNKALLG 60
Query: 1503 DEKAKMGLSFMYDAPAGMTKRXXXXXXXXXEWQRKYQAPREDWAKGNEEIQDQPFGIQVR 1324
DEKAKMGLSFMYDAPAGMTKR EWQRKYQAPREDWAKGNEEIQDQPFGIQVR
Sbjct: 61 DEKAKMGLSFMYDAPAGMTKREEPKEEPKFEWQRKYQAPREDWAKGNEEIQDQPFGIQVR 120
Query: 1323 NVRCCKCHKWGHINTDRECPLFGKSGNFEDEGYANNPSDLIKDLRRRRQEXXXXXXXXXX 1144
NVRCCKCHKWGHINTDRECPLFGKSGNFEDEGYANNPSDLIKDLRRRRQE
Sbjct: 121 NVRCCKCHKWGHINTDRECPLFGKSGNFEDEGYANNPSDLIKDLRRRRQEGKAGPSTSKS 180
Query: 1143 XXXXXXXXXXXXXEWMDHQQLASDMREEHGIKLKSSVLAGMQTDQQXXXXXXXXXXXXXX 964
EWMDHQQLASDMREEHGIKLKSSVLAGMQTDQQ
Sbjct: 181 SAAAATGEDDDEDEWMDHQQLASDMREEHGIKLKSSVLAGMQTDQQLTRMKKEMTEEEMM 240
Query: 963 XEFFNSMTXXXXXXXXXXLMSGADLEDVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 784
EFFNSMT LMSGADLEDVM
Sbjct: 241 LEFFNSMTEKEKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKS 300
Query: 783 XXXXXXXXXXXXXXXXXXXXXXXKRIKREVESSPEYRSKYIKQEVLSEDENSHGRKDSSR 604
KRIKREVESSPEYRSKYIKQEVLSEDENSHGRKDSSR
Sbjct: 301 KSRETDDDSDGSDSEDDWKEKSSKRIKREVESSPEYRSKYIKQEVLSEDENSHGRKDSSR 360
Query: 603 KRAHNXXXXXXXXXXXXXXXXXXXXSPNAKRSIGLXXXXXXXXXXXXXXXXXXQDXXXXX 424
KRAHN SPNAKRSIGL QD
Sbjct: 361 KRAHNDSESSNEVRSSERKRSRRDDSPNAKRSIGLKSPERRSSRDRKSSPKQRQDSPVRR 420
Query: 423 XXXXXXXXXXSQRVRKHSPEQKRNGRHDXXXXXXXXXXXXXXPDNRQLGSRKQYSPLRRR 244
SQRVRKHSPEQKRNGRHD PDNRQLGSRKQYSPLRRR
Sbjct: 421 RRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRRRRSPSPDNRQLGSRKQYSPLRRR 480
Query: 243 QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNKLPVRRRRHDS 64
Q PNKLPVRRRRHDS
Sbjct: 481 QSSPMVASPRRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSPNKLPVRRRRHDS 540
Query: 63 GSPDRDGSESPKMWRKKSHK 4
GSPDRDGSESPKMWRKKSHK
Sbjct: 541 GSPDRDGSESPKMWRKKSHK 560