Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F54D5_2
(870 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17534359|ref|NP_496466.1| transcription initiation factor TFI... 519 e-146
gi|7504186|pir||T22650 hypothetical protein F54D5.11 - Caenorhab... 508 e-143
gi|39597252|emb|CAE59480.1| Hypothetical protein CBG02864 [Caeno... 463 e-129
gi|267060|sp|P29540|T2EB_XENLA Transcription initiation factor I... 183 5e-45
gi|47086579|ref|NP_997896.1| Unknown (protein for MGC:77074) [Da... 179 9e-44
gi|4504195|ref|NP_002086.1| general transcription factor IIE, po... 175 1e-42
gi|228300|prf||1802389A transcription factor IIE:SUBUNIT=beta 174 2e-42
gi|34878722|ref|XP_224929.2| similar to general transcription fa... 173 4e-42
gi|12841072|dbj|BAB25066.1| unnamed protein product [Mus musculus] 173 4e-42
gi|50746379|ref|XP_420469.1| PREDICTED: similar to Werner syndro... 173 4e-42
gi|11611843|gb|AAG39077.1| general transcription factor [Homo sa... 173 5e-42
gi|18043581|gb|AAH20016.1| General transcription factor II E, po... 173 5e-42
gi|228298|prf||1802387B transcription factor IIE:SUBUNIT=small 34kD 172 7e-42
gi|31980885|ref|NP_080860.2| general transcription factor II E, ... 171 1e-41
gi|48096452|ref|XP_394695.1| similar to ENSANGP00000020992 [Apis... 171 1e-41
gi|31212815|ref|XP_315392.1| ENSANGP00000020992 [Anopheles gambi... 165 1e-39
gi|12861985|dbj|BAB32319.1| unnamed protein product [Mus musculus] 165 1e-39
gi|17648009|ref|NP_523923.1| CG1276-PA [Drosophila melanogaster]... 160 3e-38
gi|47213038|emb|CAF93447.1| unnamed protein product [Tetraodon n... 146 5e-34
gi|7766902|pdb|1D8J|A Chain A, Solution Structure Of The Central... 65 1e-09
gi|49096350|ref|XP_409635.1| hypothetical protein AN5498.2 [Aspe... 65 2e-09
gi|37534050|ref|NP_921327.1| putative Transcription initiation f... 54 3e-06
gi|19074285|ref|NP_585791.1| TRANSCRIPTION INITIATION FACTOR TFI... 50 6e-05
gi|50556002|ref|XP_505409.1| hypothetical protein [Yarrowia lipo... 49 1e-04
gi|16945428|emb|CAB91686.2| related to transcription initiation ... 46 0.001
gi|32405230|ref|XP_323228.1| related to transcription initiation... 46 0.001
gi|1174562|sp|P36145|T2EB_YEAST Transcription initiation factor ... 46 0.001
gi|6322915|ref|NP_012988.1| TFIIE small subunit, involved in RNA... 46 0.001
gi|15235379|ref|NP_193766.1| transcription initiation factor-rel... 45 0.002
gi|46445405|gb|EAL04674.1| hypothetical protein CaO19.12345 [Can... 45 0.003
gi|50415793|ref|XP_457498.1| unnamed protein product [Debaryomyc... 44 0.005
gi|46128483|ref|XP_388795.1| hypothetical protein FG08619.1 [Gib... 43 0.010
gi|50294380|ref|XP_449601.1| unnamed protein product [Candida gl... 40 0.067
gi|45185930|ref|NP_983646.1| ACR244Cp [Eremothecium gossypii] >g... 39 0.19
gi|38110883|gb|EAA56538.1| hypothetical protein MG06509.4 [Magna... 38 0.33
gi|49068860|ref|XP_398719.1| hypothetical protein UM01104.1 [Ust... 37 0.43
gi|38080986|ref|XP_359021.1| similar to LRRGT00108 [Mus musculus] 37 0.56
gi|46442063|gb|EAL01355.1| hypothetical protein CaO19.10199 [Can... 36 0.96
gi|50302659|ref|XP_451265.1| unnamed protein product [Kluyveromy... 36 1.3
gi|48094742|ref|XP_392176.1| similar to Rho-kinase [Apis mellifera] 34 3.7
gi|17535377|ref|NP_495184.1| protein tyrosine phosphatase, non-r... 34 3.7
gi|17511121|ref|NP_492452.1| eukaryotic initiation factor 3, gam... 34 4.8
gi|24665832|ref|NP_648966.1| CG13724-PA [Drosophila melanogaster... 33 6.2
gi|7494131|pir||T30804 P-glycoprotein 6 - Entamoeba histolytica ... 33 6.2
gi|48854703|ref|ZP_00308864.1| COG0664: cAMP-binding proteins - ... 33 8.2
gi|22760965|dbj|BAC11399.1| unnamed protein product [Homo sapiens] 33 8.2
>gi|17534359|ref|NP_496466.1| transcription initiation factor TFIIE,
beta subunit (33.0 kD) (2L832) [Caenorhabditis elegans]
gi|1638825|emb|CAA70049.1| TFIIE-beta protein [Caenorhabditis
elegans]
gi|13548367|emb|CAA91336.2| Hypothetical protein F54D5.11
[Caenorhabditis elegans]
Length = 289
Score = 519 bits (1337), Expect = e-146
Identities = 263/289 (91%), Positives = 263/289 (91%)
Frame = -1
Query: 870 MDPELLRQRTAFQKHAATTMAVQNKPTTAPNSHTTYXXXXXXXXXXXXSGPAQNLSKLPD 691
MDPELLRQRTAFQKHAATTMAVQNKPTTAPNSHTTY SGPAQNLSKLPD
Sbjct: 1 MDPELLRQRTAFQKHAATTMAVQNKPTTAPNSHTTYSSEAAKAKKKKSSGPAQNLSKLPD 60
Query: 690 FXXXXXXXXXXXXXXNFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKRSLAF 511
F NFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKRSLAF
Sbjct: 61 FNNSVSNANALSNATNFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKRSLAF 120
Query: 510 LQEALPNNPRLIMESEKFAFRPPYKIKGKTSLVAVARKHYQDGKGGILVSDLAECVANYD 331
LQEALPNNPRLIMESEKFAFRPPYKIKGKTSLVAVARKHYQDGKGGILVSDLAECVANYD
Sbjct: 121 LQEALPNNPRLIMESEKFAFRPPYKIKGKTSLVAVARKHYQDGKGGILVSDLAECVANYD 180
Query: 330 ALLQQVSSEVIVVPTQVNKKKDRVVFYNDKEFTFPELEDDFKALWRHVSVDHLDEKKIEE 151
ALLQQVSSEVIVVPTQVNKKKDRVVFYNDKEFTFPELEDDFKALWRHVSVDHLDEKKIEE
Sbjct: 181 ALLQQVSSEVIVVPTQVNKKKDRVVFYNDKEFTFPELEDDFKALWRHVSVDHLDEKKIEE 240
Query: 150 YLQKKGLDAMKDLTPKVRMQAPLKRKAAKRRFNQKVQNEHMDGVLEDYE 4
YLQKKGLDAMKDLTPKVRMQAPLKRKAAKRRFNQKVQNEHMDGVLEDYE
Sbjct: 241 YLQKKGLDAMKDLTPKVRMQAPLKRKAAKRRFNQKVQNEHMDGVLEDYE 289