Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F41G3_1
(834 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17533911|ref|NP_495376.1| protein -interacting like (2H33) [C... 498 e-140
gi|7503205|pir||T16328 hypothetical protein F41G3.6 - Caenorhabd... 497 e-139
gi|39590214|emb|CAE65952.1| Hypothetical protein CBG11133 [Caeno... 386 e-106
gi|50730945|ref|XP_417092.1| PREDICTED: similar to Exosome compl... 64 3e-09
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis] 63 9e-09
gi|31415882|ref|NP_852480.1| exosome component 8; Opa-interactin... 60 8e-08
gi|40254486|ref|NP_081424.2| CBP-interacting protein 3 [Mus musc... 59 2e-07
gi|45595709|gb|AAH67250.1| Exosc8 protein [Mus musculus] 58 2e-07
gi|21759414|sp|Q9D753|RR43_MOUSE Exosome complex exonuclease RRP... 58 2e-07
gi|27690954|ref|XP_215566.1| similar to Exosome complex exonucle... 58 3e-07
gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sap... 57 5e-07
gi|50838810|ref|NP_001002865.1| exosome component 8; Opa-interac... 56 8e-07
gi|31239481|ref|XP_320154.1| ENSANGP00000011759 [Anopheles gambi... 47 7e-04
gi|15678709|ref|NP_275825.1| conserved protein [Methanothermobac... 47 7e-04
gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon n... 44 0.004
gi|14591332|ref|NP_143410.1| autoantigen like protein [Pyrococcu... 42 0.016
gi|49127921|ref|XP_412819.1| hypothetical protein AN8682.2 [Aspe... 41 0.037
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Crypto... 40 0.048
gi|49114791|gb|AAH72749.1| Unknown (protein for MGC:79114) [Xeno... 40 0.063
gi|21362905|sp|Q9D0M0|RR42_MOUSE Exosome complex exonuclease RRP... 40 0.082
gi|14520827|ref|NP_126302.1| polyribonucleotide nucleotidyltrans... 40 0.082
gi|46128401|ref|XP_388754.1| hypothetical protein FG08578.1 [Gib... 39 0.11
gi|30962875|gb|AAH52656.1| Exosc7 protein [Mus musculus] 39 0.14
gi|18977939|ref|NP_579296.1| hypothetical protein PF1567 [Pyroco... 39 0.14
gi|19075183|ref|NP_587683.1| putative exosome 3'-5' exoribonucle... 39 0.18
gi|46435645|gb|EAK95022.1| hypothetical protein CaO19.11559 [Can... 38 0.24
gi|34866707|ref|XP_236745.2| similar to Exosome complex exonucle... 38 0.31
gi|48102202|ref|XP_395303.1| similar to Exosome complex exonucle... 38 0.31
gi|11498105|ref|NP_069330.1| conserved hypothetical protein [Arc... 37 0.41
gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens] 37 0.41
gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45... 37 0.41
gi|24307981|ref|NP_055819.1| exosome component 7 [Homo sapiens] ... 37 0.41
gi|16082607|ref|NP_394748.1| RNase PH-related exoribonuclease [T... 37 0.41
gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus] 37 0.53
gi|18398046|ref|NP_566318.1| 3' exoribonuclease family domain 1-... 37 0.53
gi|28548933|ref|XP_284543.1| RIKEN cDNA 2610002K22 [Mus musculus] 37 0.53
gi|6466958|gb|AAF13093.1| hypothetical protein [Arabidopsis thal... 37 0.53
gi|6648187|gb|AAF21185.1| putative 3' exoribonuclease [Arabidops... 37 0.53
gi|14285675|sp|Q06265|RR45_HUMAN Exosome complex exonuclease RRP... 37 0.69
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen... 37 0.69
gi|47208122|emb|CAF91040.1| unnamed protein product [Tetraodon n... 37 0.69
gi|15920654|ref|NP_376323.1| 275aa long conserved hypothetical p... 37 0.69
gi|7513248|pir||G01425 nucleolar 75K autoantigen PM-Scl - human ... 37 0.69
gi|4826922|ref|NP_005024.1| exosome component 9; polymyositis/sc... 37 0.69
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen... 37 0.69
gi|15897635|ref|NP_342240.1| Conserved hypothetical protein [Sul... 36 1.2
gi|48837579|ref|ZP_00294552.1| COG2123: RNase PH-related exoribo... 36 1.2
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma au... 36 1.2
gi|19113482|ref|NP_596690.1| hypothetical serine-rich secreted p... 35 1.5
gi|31207299|ref|XP_312616.1| ENSANGP00000015425 [Anopheles gambi... 35 2.0
gi|50290581|ref|XP_447723.1| unnamed protein product [Candida gl... 35 2.0
gi|32420303|ref|XP_330595.1| hypothetical protein [Neurospora cr... 35 2.0
gi|34856829|ref|XP_215550.2| similar to polymyositis scleroderma... 35 2.0
gi|50415084|ref|XP_457450.1| unnamed protein product [Debaryomyc... 35 2.0
gi|6320486|ref|NP_010566.1| Ribosomal RNA Processing; Rrp45p [Sa... 35 2.0
gi|9506981|ref|NP_062266.1| exosome component 9; polymyositis/sc... 35 2.0
gi|15232342|ref|NP_191609.1| 3' exoribonuclease family protein [... 35 2.0
gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus] 35 2.0
gi|49078716|ref|XP_403083.1| hypothetical protein UM05468.1 [Ust... 35 2.6
gi|50410831|ref|XP_456995.1| unnamed protein product [Debaryomyc... 34 3.4
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Crypto... 34 3.4
gi|50732870|ref|XP_418803.1| PREDICTED: similar to Exosome compl... 34 3.4
gi|27469167|ref|NP_765804.1| streptococcal hemagglutinin protein... 34 3.4
gi|12835620|dbj|BAB23303.1| unnamed protein product [Mus musculus] 34 3.4
gi|28573444|ref|NP_725517.2| CG8395-PA [Drosophila melanogaster]... 34 4.5
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen ... 34 4.5
gi|45184700|ref|NP_982418.1| AAL124Wp [Eremothecium gossypii] >g... 33 5.9
gi|50418038|gb|AAH77415.1| Unknown (protein for MGC:81766) [Xeno... 33 5.9
gi|50286939|ref|XP_445899.1| unnamed protein product [Candida gl... 33 7.6
>gi|17533911|ref|NP_495376.1| protein -interacting like (2H33)
[Caenorhabditis elegans]
gi|15277389|gb|AAK93855.1| Hypothetical protein F41G3.14
[Caenorhabditis elegans]
Length = 277
Score = 498 bits (1281), Expect = e-140
Identities = 255/277 (92%), Positives = 255/277 (92%)
Frame = +1
Query: 1 MSSEVLRGIDPRGYFATFIKEGVYPDGRGLLDEQKLVFKXXXXXXXXXXXXXXXXXXXXX 180
MSSEVLRGIDPRGYFATFIKEGVYPDGRGLLDEQKLVFK
Sbjct: 1 MSSEVLRGIDPRGYFATFIKEGVYPDGRGLLDEQKLVFKQGECGGVGSSVVSTQGVTVSC 60
Query: 181 XIQASVSLVSDAPLVDIKIEGSQQLSEKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGK 360
IQASVSLVSDAPLVDIKIEGSQQLSEKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGK
Sbjct: 61 SIQASVSLVSDAPLVDIKIEGSQQLSEKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGK 120
Query: 361 PLPLEWQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQA 540
PLPLEWQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQA
Sbjct: 121 PLPLEWQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQA 180
Query: 541 DYRTMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVCRATCSVIVGKDDHM 720
DYRTMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVCRATCSVIVGKDDHM
Sbjct: 181 DYRTMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVCRATCSVIVGKDDHM 240
Query: 721 VMVRERGQFSSFSLLKKMCQITAERRHKFVESLQNVV 831
VMVRERGQFSSFSLLKKMCQITAERRHKFVESLQNVV
Sbjct: 241 VMVRERGQFSSFSLLKKMCQITAERRHKFVESLQNVV 277