Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F33H2_4
(2952 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17507137|ref|NP_493618.1| deletions Of G-rich DNA (111.4 kD) ... 1840 0.0
gi|39584403|emb|CAE72541.1| Hypothetical protein CBG19723 [Caeno... 682 0.0
gi|30795235|ref|NP_840094.1| BRCA1 interacting protein C-termina... 365 3e-99
gi|14042978|ref|NP_114432.1| BRCA1 interacting protein C-termina... 356 2e-96
gi|22760335|dbj|BAC11156.1| unnamed protein product [Homo sapiens] 228 5e-58
gi|47224934|emb|CAG06504.1| unnamed protein product [Tetraodon n... 228 5e-58
gi|48113670|ref|XP_396357.1| similar to BRCA1 interacting protei... 221 6e-56
gi|48096297|ref|XP_394659.1| similar to BRCA1 interacting protei... 221 6e-56
gi|42562200|ref|NP_173495.2| helicase-related [Arabidopsis thali... 216 2e-54
gi|50726319|dbj|BAD33894.1| putative BRCA1 interacting protein C... 209 2e-52
gi|24639946|ref|NP_572254.1| CG4078-PA [Drosophila melanogaster]... 192 5e-47
gi|31204427|ref|XP_311162.1| ENSANGP00000019029 [Anopheles gambi... 190 2e-46
gi|12324581|gb|AAG52242.1| hypothetical protein; 30600-24965 [Ar... 188 7e-46
gi|42563365|ref|NP_178113.3| helicase-related [Arabidopsis thali... 188 7e-46
gi|42562202|ref|NP_173498.2| helicase-related [Arabidopsis thali... 185 6e-45
gi|34912274|ref|NP_917484.1| P0710A02.18 [Oryza sativa (japonica... 182 4e-44
gi|38707238|gb|AAR27237.1| DEAH helicase isoform 5 [Mus musculus] 173 2e-41
gi|50233926|ref|NP_001001882.2| expressed sequence AW540478; reg... 173 2e-41
gi|38707234|gb|AAR27235.1| DEAH helicase isoform 2 [Mus musculus] 173 2e-41
gi|38707236|gb|AAR27236.1| DEAH helicase isoform 3 [Mus musculus] 173 2e-41
gi|38075784|ref|XP_194070.2| similar to helicase-like protein NH... 173 2e-41
gi|50510779|dbj|BAD32375.1| mKIAA1088 protein [Mus musculus] 173 2e-41
gi|38707226|gb|AAR27231.1| DEAH helicase isoform 5 [Mus spretus] 172 6e-41
gi|46452191|gb|AAS98192.1| DEAH helicase isoform 1 [Mus spretus] 172 6e-41
gi|38707220|gb|AAR27228.1| DEAH helicase isoform 2 [Mus spretus] 172 6e-41
gi|38707222|gb|AAR27229.1| DEAH helicase isoform 3 [Mus spretus] 172 6e-41
gi|38707224|gb|AAR27230.1| DEAH helicase isoform 4 [Mus spretus] 172 6e-41
gi|38707228|gb|AAR27232.1| DEAH helicase isoform 6 [Mus spretus] 172 6e-41
gi|7706541|ref|NP_057518.1| helicase-like protein NHL isoform 1 ... 166 3e-39
gi|20521760|dbj|BAA83040.2| KIAA1088 protein [Homo sapiens] 166 3e-39
gi|14790174|ref|NP_116575.1| helicase-like protein NHL isoform 2... 166 3e-39
gi|11190530|emb|CAC16224.1| bK3184A7.3.5 (helicase-like protein ... 166 3e-39
gi|11360303|pir||T45294 hypothetical protein KIAA1088 [imported]... 166 3e-39
gi|32398845|emb|CAD98555.1| similar to helicase-like protein nhl... 164 9e-39
gi|46229294|gb|EAK90143.1| DNA repair helicase similar to helica... 164 9e-39
gi|26348753|dbj|BAC38016.1| unnamed protein product [Mus musculus] 164 1e-38
gi|49073162|ref|XP_400813.1| hypothetical protein UM03198.1 [Ust... 163 3e-38
gi|19074028|ref|NP_584634.1| ATP-DEPENDENT DNA-BINDING HELICASE ... 160 1e-37
gi|29612643|gb|AAH49929.1| 4732462I11Rik protein [Mus musculus] 158 8e-37
gi|38082753|ref|XP_128714.3| RIKEN cDNA 4732462I11 gene [Mus mus... 158 8e-37
gi|34877974|ref|XP_237570.2| similar to DEAD/H (Asp-Glu-Ala-Asp/... 153 3e-35
gi|39580814|emb|CAE58983.1| Hypothetical protein CBG02256 [Caeno... 152 3e-35
gi|39579363|emb|CAE56914.1| Hypothetical protein CBG24757 [Caeno... 152 3e-35
gi|34872948|ref|XP_340870.1| similar to BRCA1 interacting protei... 152 6e-35
gi|25372835|pir||G96830 hypothetical protein F18B13.3 [imported]... 150 1e-34
gi|23509302|ref|NP_701969.1| DNA repair helicase, putative [Plas... 149 4e-34
gi|50728986|ref|XP_416375.1| PREDICTED: similar to DEAD/H (Asp-G... 148 9e-34
gi|8886948|gb|AAF80634.1| F2D10.21 [Arabidopsis thaliana] 147 1e-33
gi|23483134|gb|EAA18905.1| DNA repair helicase, putative [Plasmo... 144 1e-32
gi|47212324|emb|CAF91262.1| unnamed protein product [Tetraodon n... 142 5e-32
gi|17506821|ref|NP_492769.1| helicase-like protein NHL (112.9 kD... 141 8e-32
gi|50758827|ref|XP_417435.1| PREDICTED: similar to KIAA1088 prot... 140 2e-31
gi|29476793|gb|AAH50069.1| DDX11 protein [Homo sapiens] 140 2e-31
gi|1517816|gb|AAB06962.1| helicase 140 2e-31
gi|13787197|ref|NP_085911.1| DEAD/H (Asp-Glu-Ala-Asp/His) box po... 140 2e-31
gi|18543219|ref|NP_569898.1| CG11403-PA [Drosophila melanogaster... 139 4e-31
gi|1517818|gb|AAB06963.1| helicase 137 2e-30
gi|29245082|gb|EAA36743.1| GLP_83_5460_2281 [Giardia lamblia ATC... 137 2e-30
gi|25402926|pir||A86340 protein F2D10.24 [imported] - Arabidopsi... 135 7e-30
gi|50758364|ref|XP_415887.1| PREDICTED: similar to BRCA1 interac... 129 4e-28
gi|39591898|emb|CAE71476.1| Hypothetical protein CBG18394 [Caeno... 129 5e-28
gi|46441268|gb|EAL00566.1| hypothetical protein CaO19.2000 [Cand... 128 9e-28
gi|19115889|ref|NP_594977.1| putative helicase [Schizosaccharomy... 128 9e-28
gi|26342272|dbj|BAC34798.1| unnamed protein product [Mus musculus] 127 1e-27
gi|37747678|gb|AAH60014.1| MGC68622 protein [Xenopus laevis] 123 3e-26
gi|46981234|gb|AAT07552.1| unknown protein [Oryza sativa (japoni... 122 5e-26
gi|50405587|ref|XP_456430.1| unnamed protein product [Debaryomyc... 122 7e-26
gi|50260183|gb|EAL22844.1| hypothetical protein CNBB0650 [Crypto... 121 9e-26
gi|46126959|ref|XP_388033.1| hypothetical protein FG07857.1 [Gib... 117 2e-24
gi|49092240|ref|XP_407581.1| hypothetical protein AN3444.2 [Aspe... 116 4e-24
gi|15220007|ref|NP_178107.1| helicase-related [Arabidopsis thali... 116 4e-24
gi|47204868|emb|CAF94395.1| unnamed protein product [Tetraodon n... 116 4e-24
gi|17554258|ref|NP_499295.1| putative protein, with a coiled coi... 115 8e-24
gi|29792240|gb|AAH50522.1| DDX11 protein [Homo sapiens] 115 8e-24
gi|15030039|gb|AAH11264.1| DDX11 protein [Homo sapiens] 115 8e-24
gi|1666897|gb|AAB18751.1| CHL1 protein [Homo sapiens] 115 8e-24
gi|19074270|ref|NP_585776.1| DNA REPAIR HELICASE OF THE RAD3/XPD... 114 1e-23
gi|38105474|gb|EAA51895.1| hypothetical protein MG03490.4 [Magna... 114 2e-23
gi|50312507|ref|XP_456289.1| unnamed protein product [Kluyveromy... 113 2e-23
gi|34861046|ref|XP_342603.1| similar to helicase-like protein NH... 110 2e-22
gi|50549437|ref|XP_502189.1| hypothetical protein [Yarrowia lipo... 110 2e-22
gi|50405229|ref|YP_054321.1| Helicase, putative [Paramecium tetr... 107 1e-21
gi|31242309|ref|XP_321585.1| ENSANGP00000009606 [Anopheles gambi... 107 2e-21
gi|50260539|gb|EAL23194.1| hypothetical protein CNBA5380 [Crypto... 105 5e-21
gi|32423105|ref|XP_331990.1| hypothetical protein [Neurospora cr... 105 6e-21
gi|19173439|ref|NP_597242.1| ATP DEPENDENT DNA BINDING HELICASE ... 105 8e-21
gi|6325249|ref|NP_015317.1| Required for mitotic chromosome segr... 104 1e-20
gi|47214240|emb|CAG12459.1| unnamed protein product [Tetraodon n... 104 1e-20
gi|34861040|ref|XP_215972.2| similar to helicase-like protein NH... 103 2e-20
gi|2058510|gb|AAB62733.1| RepD [Dictyostelium discoideum] 103 2e-20
gi|50293497|ref|XP_449160.1| unnamed protein product [Candida gl... 101 9e-20
gi|46229591|gb|EAK90409.1| RAD3'DEXDc+HELICc protein' [Cryptospo... 100 2e-19
gi|25518411|pir||C86163 hypothetical protein F15K9.20 - Arabidop... 99 6e-19
gi|2134009|pir||I51720 probable DNA helicase ERCC2/XPD - souther... 99 6e-19
gi|15218736|ref|NP_171818.1| DNA repair protein / transcription ... 99 6e-19
gi|49139744|ref|XP_413573.1| hypothetical protein AN9436.2 [Aspe... 99 8e-19
gi|6503086|gb|AAF14582.1| nucleotide excision repair protein XP-... 98 1e-18
gi|50293749|ref|XP_449286.1| unnamed protein product [Candida gl... 98 1e-18
gi|50306065|ref|XP_452994.1| unnamed protein product [Kluyveromy... 97 2e-18
gi|44889982|emb|CAF32100.1| DNA repair helicase, putative [Asper... 97 2e-18
gi|34527746|dbj|BAC85446.1| unnamed protein product [Homo sapiens] 97 2e-18
gi|296645|emb|CAA36463.1| ercc2 gene product [Homo sapiens] 97 2e-18
gi|15834617|ref|NP_000391.1| excision repair cross-complementing... 97 2e-18
gi|21322260|gb|AAM45142.1| excision repair cross-complementing r... 97 2e-18
gi|6321019|ref|NP_011098.1| 5' to 3' DNA helicase, involved in ... 97 3e-18
gi|45201210|ref|NP_986780.1| AGR114Cp [Eremothecium gossypii] >g... 97 3e-18
gi|101069|pir||S22660 excision repair protein rad15 [validated] ... 96 7e-18
gi|19113937|ref|NP_593025.1| dna repair helicase rad15 [Schizosa... 96 7e-18
gi|5022|emb|CAA43022.1| rad15 [Schizosaccharomyces pombe] 95 9e-18
gi|31542614|ref|NP_031975.2| excision repair cross-complementing... 95 1e-17
gi|2495145|sp|Q60452|XPD_CRIGR TFIIH basal transcription factor ... 95 1e-17
gi|21961619|gb|AAH34517.1| Ercc2 protein [Mus musculus] 95 1e-17
gi|34855321|ref|XP_218424.2| similar to nucleotide excision repa... 95 1e-17
gi|12835975|dbj|BAB23443.1| unnamed protein product [Mus musculus] 95 1e-17
gi|2495146|sp|O08811|XPD_MOUSE TFIIH basal transcription factor ... 94 1e-17
gi|50426909|ref|XP_462055.1| unnamed protein product [Debaryomyc... 94 1e-17
gi|45201086|ref|NP_986656.1| AGL010Wp [Eremothecium gossypii] >g... 93 3e-17
gi|39588875|emb|CAE69505.1| Hypothetical protein CBG15713 [Caeno... 93 3e-17
gi|48105772|ref|XP_396001.1| similar to CG4078-PA [Apis mellifera] 93 3e-17
gi|49075396|ref|XP_401766.1| hypothetical protein UM04151.1 [Ust... 93 4e-17
gi|38455510|gb|AAR20853.1| xeroderma pigmentosum D [Drosophila m... 92 6e-17
gi|38455500|gb|AAR20847.1| xeroderma pigmentosum D [Drosophila m... 92 6e-17
gi|38455521|gb|AAR20860.1| xeroderma pigmentosum D [Drosophila m... 92 6e-17
gi|17137232|ref|NP_477178.1| CG9433-PB [Drosophila melanogaster]... 92 6e-17
gi|45551134|ref|NP_726036.2| CG9433-PA [Drosophila melanogaster]... 92 6e-17
gi|48106757|ref|XP_396155.1| similar to ENSANGP00000018237 [Apis... 92 7e-17
gi|2632247|emb|CAA67895.1| CHL1 protein [Homo sapiens] 92 9e-17
gi|13787200|ref|NP_004390.2| DEAD/H (Asp-Glu-Ala-Asp/His) box po... 92 9e-17
gi|38105064|gb|EAA51537.1| hypothetical protein MG03132.4 [Magna... 91 1e-16
gi|50556538|ref|XP_505677.1| hypothetical protein [Yarrowia lipo... 91 1e-16
gi|46442275|gb|EAL01566.1| hypothetical protein CaO19.7119 [Cand... 91 2e-16
gi|32415169|ref|XP_328064.1| probable excision repair protein rh... 91 2e-16
gi|16416010|emb|CAB91361.2| probable excision repair protein rhp... 91 2e-16
gi|38455518|gb|AAR20858.1| xeroderma pigmentosum D [Drosophila m... 91 2e-16
gi|31205897|ref|XP_311900.1| ENSANGP00000018237 [Anopheles gambi... 91 2e-16
gi|23619195|ref|NP_705157.1| helicase, putative [Plasmodium falc... 90 3e-16
gi|17556086|ref|NP_497182.1| TFIIH basal transcription factor co... 90 4e-16
gi|30349058|gb|AAK95892.2| Hypothetical protein Y50D7A.2 [Caenor... 90 4e-16
gi|46116906|ref|XP_384471.1| conserved hypothetical protein [Gib... 89 8e-16
gi|42660009|ref|XP_374959.1| similar to DDX11 protein [Homo sapi... 87 2e-15
gi|23481970|gb|EAA18094.1| RAD3-like DNA helicase-related [Plasm... 86 5e-15
gi|23613852|ref|NP_704873.1| DNA excision-repair helicase, putat... 84 2e-14
gi|18026950|gb|AAL55708.1| RAD3-like DNA helicase [Plasmodium fa... 84 3e-14
gi|29251294|gb|EAA42777.1| GLP_81_188987_188418 [Giardia lamblia... 83 4e-14
gi|32189754|ref|NP_859484.1| helicase 1, putative [Leishmania ma... 77 2e-12
gi|29247075|gb|EAA38649.1| GLP_59_20200_22722 [Giardia lamblia A... 75 9e-12
gi|14521544|ref|NP_127020.1| dna repair helicase rad3 [Pyrococcu... 74 2e-11
gi|14590576|ref|NP_142644.1| hypothetical protein PH0697 [Pyroco... 72 1e-10
gi|42660006|ref|XP_370674.2| similar to helicase [Homo sapiens] 71 2e-10
gi|15894949|ref|NP_348298.1| Rad3-related DNA helicase [Clostrid... 70 3e-10
gi|41055526|ref|NP_957220.1| similar to excision repair cross-co... 69 7e-10
gi|18977305|ref|NP_578662.1| DNA repair helicase rad3, putative ... 69 9e-10
gi|18310179|ref|NP_562113.1| probable helicase protein [Clostrid... 69 9e-10
gi|47221017|emb|CAG12711.1| unnamed protein product [Tetraodon n... 65 7e-09
gi|23482830|gb|EAA18697.1| 55525-51977 [Plasmodium yoelii yoelii] 62 6e-08
gi|48838834|ref|ZP_00295772.1| COG1199: Rad3-related DNA helicas... 62 1e-07
gi|48860415|ref|ZP_00314340.1| COG1199: Rad3-related DNA helicas... 62 1e-07
gi|23490416|gb|EAA22200.1| hypothetical protein [Plasmodium yoel... 59 9e-07
gi|20089233|ref|NP_615308.1| DNA helicase RepD [Methanosarcina a... 57 2e-06
gi|10639203|emb|CAC11205.1| DNA repair helicase Rad3 related pro... 57 2e-06
gi|16082477|ref|NP_393536.1| Rad3-related DNA helicase [Thermopl... 57 2e-06
gi|34877982|ref|XP_237565.2| similar to DEAD/H (Asp-Glu-Ala-Asp/... 57 3e-06
gi|7512481|pir||G02071 helicase - human (fragment) >gnl|BL_ORD_I... 56 4e-06
gi|47224139|emb|CAG13059.1| unnamed protein product [Tetraodon n... 55 1e-05
gi|15922611|ref|NP_378280.1| 548aa long conserved hypothetical p... 55 1e-05
gi|13540844|ref|NP_110532.1| Rad3-related DNA helicase [Thermopl... 54 2e-05
gi|14324227|dbj|BAB59155.1| DNA repair helicase [Thermoplasma vo... 54 2e-05
gi|7521985|pir||T31009 hypothetical protein 537 - Sulfolobus sp.... 54 2e-05
gi|30582605|gb|AAP35529.1| excision repair cross-complementing r... 54 2e-05
gi|30584019|gb|AAP36258.1| Homo sapiens excision repair cross-co... 54 2e-05
gi|46142550|ref|ZP_00149253.2| COG1199: Rad3-related DNA helicas... 54 2e-05
gi|21227689|ref|NP_633611.1| DNA repair helicase [Methanosarcina... 54 3e-05
gi|18313745|ref|NP_560412.1| conserved hypothetical protein [Pyr... 52 8e-05
gi|15791218|ref|NP_281042.1| helicase; Rad3b [Halobacterium sp. ... 52 8e-05
gi|15597063|ref|NP_250557.1| hypothetical protein [Pseudomonas a... 51 1e-04
gi|15897254|ref|NP_341859.1| DNA helicase [Sulfolobus solfataric... 51 1e-04
gi|23112066|ref|ZP_00097605.1| COG1199: Rad3-related DNA helicas... 51 2e-04
gi|32041938|ref|ZP_00139521.1| COG1199: Rad3-related DNA helicas... 50 2e-04
gi|48102611|ref|XP_395398.1| similar to ENSANGP00000019185 [Apis... 50 3e-04
gi|34878010|ref|XP_346092.1| similar to DEAD/H (Asp-Glu-Ala-Asp/... 48 0.001
gi|15921578|ref|NP_377247.1| 540aa long conserved hypothetical p... 48 0.001
gi|47096975|ref|ZP_00234550.1| conserved hypothetical protein [L... 48 0.001
gi|16802205|ref|NP_463690.1| similar to ATP dependent helicase [... 48 0.001
gi|26379597|dbj|BAC25422.1| unnamed protein product [Mus musculus] 48 0.002
gi|15790405|ref|NP_280229.1| helicase; Rad3a [Halobacterium sp. ... 47 0.002
gi|47092844|ref|ZP_00230627.1| conserved hypothetical protein [L... 47 0.003
gi|48824384|ref|ZP_00285765.1| COG1199: Rad3-related DNA helicas... 47 0.003
gi|46906393|ref|YP_012782.1| conserved hypothetical protein [Lis... 46 0.005
gi|48824673|ref|ZP_00286019.1| COG1199: Rad3-related DNA helicas... 46 0.006
gi|20090941|ref|NP_617016.1| conserved hypothetical protein [Met... 45 0.010
gi|16799272|ref|NP_469540.1| similar to ATP dependent helicase [... 45 0.010
gi|48785794|ref|ZP_00282003.1| COG1199: Rad3-related DNA helicas... 44 0.023
gi|34877994|ref|XP_237563.2| similar to DEAD/H (Asp-Glu-Ala-Asp/... 44 0.030
gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit... 42 0.066
gi|42521880|ref|NP_967260.1| similar to ATP dependent helicase [... 42 0.066
gi|29841033|gb|AAP06046.1| similar to GenBank Accession Number B... 42 0.086
gi|45516203|ref|ZP_00167756.1| COG1199: Rad3-related DNA helicas... 42 0.086
gi|47572944|ref|ZP_00242985.1| COG1199: Rad3-related DNA helicas... 42 0.11
gi|13787199|ref|NP_085913.1| DEAD/H (Asp-Glu-Ala-Asp/His) box po... 42 0.11
gi|46314879|ref|ZP_00215463.1| COG1199: Rad3-related DNA helicas... 41 0.15
gi|42495067|ref|NP_963976.1| ORF B494 [Sulfolobus spindle-shaped... 41 0.15
gi|21229384|ref|NP_635306.1| putative ATP-dependent helicase [Me... 41 0.19
gi|48870907|ref|ZP_00323625.1| COG1199: Rad3-related DNA helicas... 40 0.25
gi|46322090|ref|ZP_00222462.1| COG1199: Rad3-related DNA helicas... 40 0.43
gi|15679346|ref|NP_276463.1| probable ATP-dependent helicase [Me... 39 0.56
gi|23015924|ref|ZP_00055688.1| COG1061: DNA or RNA helicases of ... 39 0.73
gi|34877968|ref|XP_346085.1| similar to DEAD/H (Asp-Glu-Ala-Asp/... 39 0.73
gi|42570106|ref|NP_683519.2| protein kinase family protein [Arab... 39 0.95
gi|48477956|ref|YP_023662.1| DNA repair helicase [Picrophilus to... 39 0.95
gi|15669132|ref|NP_247937.1| ATP-dependent DNA helicase DinG, pu... 39 0.95
gi|46445810|ref|YP_007175.1| putative ATP-dependent DNA helicase... 38 1.6
gi|14600630|ref|NP_147147.1| hypothetical protein APE0322 [Aerop... 38 1.6
gi|15641992|ref|NP_231624.1| ATP-dependent helicase, DinG family... 38 1.6
gi|38234429|ref|NP_940196.1| DeaD/DeaH family helicase [Coryneba... 38 1.6
gi|47575387|ref|ZP_00245422.1| COG1199: Rad3-related DNA helicas... 37 2.1
gi|21909995|ref|NP_664263.1| putative ATP-dependent DNA helicase... 37 2.1
gi|48870578|ref|ZP_00323299.1| COG1199: Rad3-related DNA helicas... 37 2.8
gi|16079297|ref|NP_390121.1| ATP-dependent helicase [Bacillus su... 37 2.8
gi|15791246|ref|NP_281070.1| Vng2476c [Halobacterium sp. NRC-1] ... 37 2.8
gi|46323889|ref|ZP_00224252.1| COG1061: DNA or RNA helicases of ... 37 2.8
gi|44888246|sp|P93313|NU4M_ARATH NADH-ubiquinone oxidoreductase ... 37 3.6
gi|23495394|dbj|BAC19875.1| NADH dehydrogenase subunit 4 [Oryza ... 37 3.6
gi|14255|emb|CAA40452.1| NADH-ubiquinone oxidoreductase chain 4 ... 37 3.6
gi|37591106|dbj|BAC98908.1| NADH dehydrogenase subunit 4 [Brassi... 37 3.6
gi|21325291|dbj|BAB99912.1| Rad3-related DNA helicases [Coryneba... 37 3.6
gi|29150366|gb|AAO72375.1| putative RNA helicase [Oryza sativa (... 37 3.6
gi|19553718|ref|NP_601720.1| Rad3-related DNA helicase [Coryneba... 37 3.6
gi|19745746|ref|NP_606882.1| putative ATP-dependent DNA helicase... 37 3.6
gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epider... 37 3.6
gi|50842505|ref|YP_055732.1| putative ATP-dependent helicase [Pr... 37 3.6
gi|25028971|ref|NP_739025.1| putative ATP-dependent helicase [Co... 37 3.6
gi|15924445|ref|NP_371979.1| probable ATP-dependent DNA helicase... 37 3.6
gi|49483644|ref|YP_040868.1| conserved hypothetical protein [Sta... 37 3.6
gi|41326700|emb|CAF21182.1| PROBABLE ATP-DEPENDENT DNA HELICASE-... 37 3.6
gi|40795152|gb|AAR91196.1| NADH dehydrogenase subunit 4 [Zea mays] 36 4.7
gi|50418383|gb|AAH77543.1| LOC398446 protein [Xenopus laevis] 36 4.7
gi|28870212|ref|NP_792831.1| conserved hypothetical protein [Pse... 36 4.7
gi|34497446|ref|NP_901661.1| ATP-dependent DNA helicase [Chromob... 36 4.7
gi|27882644|gb|AAH43900.1| LOC398446 protein [Xenopus laevis] 36 4.7
gi|46187950|ref|ZP_00126471.2| COG1199: Rad3-related DNA helicas... 36 4.7
gi|48852039|ref|ZP_00306231.1| COG1199: Rad3-related DNA helicas... 36 6.2
gi|2134952|pir||I39171 cyclin A/CDK2-associated p45 - human >gnl... 36 6.2
gi|30062284|ref|NP_836455.1| probable ATP-dependent helicase [Sh... 36 6.2
gi|15674717|ref|NP_268891.1| putative ATP-dependent DNA helicase... 36 6.2
gi|24112167|ref|NP_706677.1| probably ATP-dependent helicase [Sh... 36 6.2
gi|21283074|ref|NP_646162.1| probable ATP-dependent DNA helicase... 36 6.2
gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactob... 35 8.0
gi|19909966|dbj|BAB87202.1| SKP2-like protein type gamma [Homo s... 35 8.0
gi|50427631|ref|XP_462428.1| unnamed protein product [Debaryomyc... 35 8.0
gi|11513315|pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Liga... 35 8.0
gi|14249170|ref|NP_116026.1| S-phase kinase-associated protein 2... 35 8.0
gi|16306595|ref|NP_005974.2| S-phase kinase-associated protein 2... 35 8.0
gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo] 35 8.0
gi|29251295|gb|EAA42778.1| GLP_81_190845_189370 [Giardia lamblia... 35 8.0
>gi|17507137|ref|NP_493618.1| deletions Of G-rich DNA (111.4 kD)
(dog-1) [Caenorhabditis elegans]
gi|7500426|pir||T21711 hypothetical protein F33H2.1 - Caenorhabditis
elegans
gi|3876642|emb|CAB04262.1| Hypothetical protein F33H2.1
[Caenorhabditis elegans]
Length = 983
Score = 1840 bits (4767), Expect = 0.0
Identities = 926/983 (94%), Positives = 926/983 (94%)
Frame = -1
Query: 2952 MSSSDAFWRMFANKNKGKSNTRSAFQVVKEEQPSTSTEPDDKKPLHHEIAGEMIKNPAKG 2773
MSSSDAFWRMFANKNKGKSNTRSAFQVVKEEQPSTSTEPDDKKPLHHEIAGEMIKNPAKG
Sbjct: 1 MSSSDAFWRMFANKNKGKSNTRSAFQVVKEEQPSTSTEPDDKKPLHHEIAGEMIKNPAKG 60
Query: 2772 KRKRVQIKNDEYEQLMMLGVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTGSG 2593
KRKRVQIKNDEYEQLMMLGVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTGSG
Sbjct: 61 KRKRVQIKNDEYEQLMMLGVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTGSG 120
Query: 2592 KTMALLASTCAWLKQYIDEKRESKEKCEIHGFSGKTQVVFTNDIGIPLESKVYXXXXXXX 2413
KTMALLASTCAWLKQYIDEKRESKEKCEIHGFSGKTQVVFTNDIGIPLESKVY
Sbjct: 121 KTMALLASTCAWLKQYIDEKRESKEKCEIHGFSGKTQVVFTNDIGIPLESKVYEEPPEEE 180
Query: 2412 XXXXXXPVKNDKLFEAQWEHDFTPHTPGETPPXXXXXXXXXXXXXXXXXXKCTCLPRVRI 2233
PVKNDKLFEAQWEHDFTPHTPGETPP KCTCLPRVRI
Sbjct: 181 EFIEPVPVKNDKLFEAQWEHDFTPHTPGETPPVTLKEELEPVKKPEPVETKCTCLPRVRI 240
Query: 2232 YYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEVNSAH 2053
YYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEVNSAH
Sbjct: 241 YYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEVNSAH 300
Query: 2052 SIGCSFKSAMKPRFEKALPLRDHLERNGTVVFDMEKIVETLAISYPQLCPYFSTNRILTQ 1873
SIGCSFKSAMKPRFEKALPLRDHLERNGTVVFDMEKIVETLAISYPQLCPYFSTNRILTQ
Sbjct: 301 SIGCSFKSAMKPRFEKALPLRDHLERNGTVVFDMEKIVETLAISYPQLCPYFSTNRILTQ 360
Query: 1872 DADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKELDDSIL 1693
DADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKELDDSIL
Sbjct: 361 DADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKELDDSIL 420
Query: 1692 SLRIKRKAVDTELDKTGIEEKLLHIPDREVHLKEFRGXXXXXXXXXXXXLRWIRQVSTEA 1513
SLRIKRKAVDTELDKTGIEEKLLHIPDREVHLKEFRG LRWIRQVSTEA
Sbjct: 421 SLRIKRKAVDTELDKTGIEEKLLHIPDREVHLKEFRGHLLYLEHLILEMLRWIRQVSTEA 480
Query: 1512 KTPARGGQDGVKTCTISSANLFTSLTDPENGVDLFTPPLTPKHAAVAASFSAITKHNEPE 1333
KTPARGGQDGVKTCTISSANLFTSLTDPENGVDLFTPPLTPKHAAVAASFSAITKHNEPE
Sbjct: 481 KTPARGGQDGVKTCTISSANLFTSLTDPENGVDLFTPPLTPKHAAVAASFSAITKHNEPE 540
Query: 1332 MQYFDAFKPSSTAIVCIEKWLYFQSYFGNQQYQSTYRLNISIEPINQNGRFNHTFDADVS 1153
MQYFDAFKPSSTAIVCIEKWLYFQSYFGNQQYQSTYRLNISIEPINQNGRFNHTFDADVS
Sbjct: 541 MQYFDAFKPSSTAIVCIEKWLYFQSYFGNQQYQSTYRLNISIEPINQNGRFNHTFDADVS 600
Query: 1152 MSTSFGNPRPTTTRSSAGPRNMQYKEENXXXXXXXXXXXXXXDPSMSETGHKPISEGCKT 973
MSTSFGNPRPTTTRSSAGPRNMQYKEEN DPSMSETGHKPISEGCKT
Sbjct: 601 MSTSFGNPRPTTTRSSAGPRNMQYKEENAWLADAAADGDDWKDPSMSETGHKPISEGCKT 660
Query: 972 TISLWCMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIF 793
TISLWCMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIF
Sbjct: 661 TISLWCMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIF 720
Query: 792 AAVLPIGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLK 613
AAVLPIGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLK
Sbjct: 721 AAVLPIGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLK 780
Query: 612 QCMIRNSTMRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRG 433
QCMIRNSTMRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRG
Sbjct: 781 QCMIRNSTMRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRG 840
Query: 432 KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYR 253
KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYR
Sbjct: 841 KVSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYR 900
Query: 252 ALNQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQLKSYPSFKEFN 73
ALNQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQLKSYPSFKEFN
Sbjct: 901 ALNQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQLKSYPSFKEFN 960
Query: 72 ANFREFIQRRHAVEKAKKENFCE 4
ANFREFIQRRHAVEKAKKENFCE
Sbjct: 961 ANFREFIQRRHAVEKAKKENFCE 983
>gi|39584403|emb|CAE72541.1| Hypothetical protein CBG19723
[Caenorhabditis briggsae]
Length = 869
Score = 682 bits (1759), Expect = 0.0
Identities = 358/586 (61%), Positives = 419/586 (71%), Gaps = 6/586 (1%)
Frame = -1
Query: 2946 SSDAFWRMFANKNKGK----SNTRSAFQVVKEEQPSTSTEPDDKKPLHHEIAGEMIKNPA 2779
S++ F+ MF NK K + + R F+VVKE+ PD KP +I E+ K
Sbjct: 2 SAEQFFSMF-NKQKKRVEVMPSNRQPFRVVKED-------PD--KP--QDIPSELQKRAR 49
Query: 2778 KGKRKRVQIKNDEYEQLMMLGVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTG 2599
KRKR++IKND+YEQLMML VPVR P+G+SLY TQKLMIVRIL ALK+SQNVLGESPTG
Sbjct: 50 NKKRKRLEIKNDQYEQLMMLSVPVRFPKGMSLYPTQKLMIVRILAALKSSQNVLGESPTG 109
Query: 2598 SGKTMALLASTCAWLKQYIDEKRESKEKCEIHGFSGKTQVVFTNDIGIPLESKVYXXXXX 2419
SGKTMALL+STCAWL QYI+EK++S+EKC IHG G + + G E++
Sbjct: 110 SGKTMALLSSTCAWLNQYIEEKKKSREKCPIHGSMGGVR---KEEYGEE-EAEENQSEVK 165
Query: 2418 XXXXXXXXPVKNDK--LFEAQWEHDFTPHTPGETPPXXXXXXXXXXXXXXXXXXKCTCLP 2245
VK +K LFE QW DF PH CTC+P
Sbjct: 166 VEVKQENIAVKTEKKDLFEEQWRDDFIPHGGPGPSLKFEMDSVKKEEKVENAATDCTCMP 225
Query: 2244 RVRIYYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEV 2065
RVRIYYGTRTHKQIAQVVKEFSRLPYA I+KHTILASR+QSCINP ARK DIS YCKE+
Sbjct: 226 RVRIYYGTRTHKQIAQVVKEFSRLPYANIIKHTILASRDQSCINPTARKQPDISGYCKEI 285
Query: 2064 NSAHSIGCSFKSAMKPRFEKALPLRDHLERNGTVVFDMEKIVETLAISYPQLCPYFSTNR 1885
NSAH IGC FK+AM+PRFEKA LR HL GT+VFDME+IVETLA++YPQ+CPYFSTNR
Sbjct: 286 NSAHGIGCQFKNAMRPRFEKASMLRSHLMDQGTMVFDMEEIVETLALAYPQICPYFSTNR 345
Query: 1884 ILTQDADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKELD 1705
ILTQDAD+IFCPFSYLVDPLIRNSSDV ++NS+VILDEAHNIEDTCREAASF+FTEKELD
Sbjct: 346 ILTQDADLIFCPFSYLVDPLIRNSSDVHVKNSVVILDEAHNIEDTCREAASFTFTEKELD 405
Query: 1704 DSILSLRIKRKAVDTELDKTGIEEKLLHIPDREVHLKEFRGXXXXXXXXXXXXLRWIRQV 1525
DS+LS R+KR A+D EE +PD +H+KEF+G LRW+R V
Sbjct: 406 DSLLSFRLKRVAIDNITSNKSAEEAFADVPDASIHMKEFKGHLMYLEHLTLEILRWVRHV 465
Query: 1524 STEAKTPARGGQDGVKTCTISSANLFTSLTDPENGVDLFTPPLTPKHAAVAASFSAITKH 1345
+ EA+TP + Q+G+KTCT+SS LF+SLT+ E GVDLF PP TPKH A+A SF AITK
Sbjct: 466 AEEARTPPKSRQEGLKTCTLSSETLFSSLTNAEIGVDLFAPPNTPKHNAIATSFGAITKQ 525
Query: 1344 NEPEMQYFDAFKPSSTAIVCIEKWLYFQSYFGNQQYQSTYRLNISI 1207
NEPEM+ D FKPS+TAIV IEKWLYFQSYFGNQQY+ TY SI
Sbjct: 526 NEPEMKEMDQFKPSATAIVVIEKWLYFQSYFGNQQYRPTYSETRSI 571
Score = 521 bits (1341), Expect = e-146
Identities = 251/304 (82%), Positives = 281/304 (91%)
Frame = -1
Query: 924 FNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIFAAVLPIGPFGNRIQCT 745
++ETRSI+LASGTLCPMDTLKTELGMEFKQQVEGDQVI+ DNIFAAVLPIGP GNRI CT
Sbjct: 565 YSETRSIILASGTLCPMDTLKTELGMEFKQQVEGDQVISPDNIFAAVLPIGPHGNRITCT 624
Query: 744 YRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLKQCMIRNSTMRQIEMKK 565
YRNTSDPES FY E+ +I+KYVC+NVPAGILCFLPSYRVL+QLK CM +N +M I+ KK
Sbjct: 625 YRNTSDPESPFYEEVASIVKYVCTNVPAGILCFLPSYRVLEQLKMCMYKNQSMLHIKSKK 684
Query: 564 VVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRGKVSEGIDFADDRARVV 385
V+L+EPRRSSEL++VMD+FD AIF+P+RFGA ING+LMFAVFRGKVSEGIDFADDRARVV
Sbjct: 685 VILFEPRRSSELSAVMDEFDEAIFNPTRFGATINGALMFAVFRGKVSEGIDFADDRARVV 744
Query: 384 ISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYRALNQALGRCLRHKNDW 205
ISVGIPYPNAMDDQVNAKK+YNDQNSKE GIL GDEWYTTQAYRALNQALGRCLRHKNDW
Sbjct: 745 ISVGIPYPNAMDDQVNAKKMYNDQNSKEMGILNGDEWYTTQAYRALNQALGRCLRHKNDW 804
Query: 204 GAMLMIDERLERQTGNLVGGASSARVSKWIRAQLKSYPSFKEFNANFREFIQRRHAVEKA 25
GAMLMID+RLERQT L GASSARVSKWIRAQLKSYPSF++FNANFREFI+RR ++ K
Sbjct: 805 GAMLMIDDRLERQTSQLTTGASSARVSKWIRAQLKSYPSFRQFNANFREFIERRLSIVKK 864
Query: 24 KKEN 13
++E+
Sbjct: 865 EQED 868