Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F32B5_5
(291 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17507075|ref|NP_491024.1| putative membrane protein (9.4 kD) ... 34 0.88
>gi|17507075|ref|NP_491024.1| putative membrane protein (9.4 kD)
(1D261) [Caenorhabditis elegans]
gi|7500318|pir||T29873 hypothetical protein F32B5.4 -
Caenorhabditis elegans
gi|2088782|gb|AAB54208.1| Hypothetical protein F32B5.4
[Caenorhabditis elegans]
Length = 96
Score = 33.9 bits (76), Expect = 0.88
Identities = 18/29 (62%), Positives = 18/29 (62%)
Frame = +1
Query: 1 MIRQXXXXXXXXXXXAMFVAQEVAEEALT 87
MIRQ AMFVAQEVAEEALT
Sbjct: 1 MIRQTTTVLVVLSLLAMFVAQEVAEEALT 29
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,703,105
Number of Sequences: 1967186
Number of extensions: 2553724
Number of successful extensions: 7978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7972
length of database: 661,712,633
effective HSP length: 72
effective length of database: 520,075,241
effective search space used: 12481805784
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)