Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F30F8_8
(927 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17509347|ref|NP_492169.1| TBP-Associated transcription Factor... 540 e-152
gi|39580105|emb|CAE56124.1| Hypothetical protein CBG23733 [Caeno... 421 e-117
gi|1491718|emb|CAA64777.1| hTAFII100 [Homo sapiens] 75 2e-12
gi|34863779|ref|XP_219965.2| similar to RIKEN cDNA 6330528C20 ge... 75 3e-12
gi|45768550|gb|AAH67651.1| Unknown (protein for IMAGE:6963216) [... 74 5e-12
gi|30354079|gb|AAH52268.1| TAF5 protein [Homo sapiens] 74 6e-12
gi|28893469|ref|NP_796316.1| TAF5 RNA polymerase II, TATA box bi... 74 6e-12
gi|1732075|gb|AAC50902.1| TBP-associated factor [Homo sapiens] 74 6e-12
gi|21071067|ref|NP_008882.2| TBP-associated factor 5; TATA box b... 74 6e-12
gi|6686341|sp|Q15542|TAF5_HUMAN Transcription initiation factor ... 74 6e-12
gi|47117222|sp|Q8C092|TAF5_MOUSE Transcription initiation factor... 71 3e-11
gi|31240845|ref|XP_320836.1| ENSANGP00000017965 [Anopheles gambi... 68 3e-10
gi|627169|pir||S33263 transcription initiation factor IID-associ... 64 4e-09
gi|17136870|ref|NP_476957.1| CG7704-PA [Drosophila melanogaster]... 64 4e-09
gi|50749745|ref|XP_421737.1| PREDICTED: similar to TAF5 RNA poly... 64 6e-09
gi|47220310|emb|CAG03344.1| unnamed protein product [Tetraodon n... 62 1e-08
gi|6319675|ref|NP_009757.1| Subunit (90 kDa) of TFIID and SAGA c... 46 0.001
gi|45190361|ref|NP_984615.1| AEL246Cp [Eremothecium gossypii] >g... 45 0.003
gi|50309993|ref|XP_455010.1| unnamed protein product [Kluyveromy... 44 0.007
gi|50424771|ref|XP_460975.1| unnamed protein product [Debaryomyc... 40 0.010
gi|39545918|gb|AAR28022.1| TAF5 [Arabidopsis thaliana] 42 0.025
gi|30689741|ref|NP_197897.2| transducin family protein / WD-40 r... 42 0.025
gi|19113046|ref|NP_596254.1| transcription initiation factor TFI... 41 0.033
gi|19075402|ref|NP_587902.1| tfiid subunit taf72p. [Schizosaccha... 40 0.056
gi|50294333|ref|XP_449578.1| unnamed protein product [Candida gl... 40 0.074
gi|38109175|gb|EAA55085.1| hypothetical protein MG06742.4 [Magna... 39 0.21
gi|50255088|gb|EAL17827.1| hypothetical protein CNBL0890 [Crypto... 38 0.28
gi|32405726|ref|XP_323476.1| related to TRANSCRIPTION INITIATION... 36 1.1
gi|50546811|ref|XP_500875.1| hypothetical protein [Yarrowia lipo... 36 1.4
gi|21464756|gb|AAM54503.1| maturase K [Petalonyx nitidus] 35 1.8
gi|26354532|dbj|BAC40894.1| unnamed protein product [Mus musculus] 35 1.8
gi|34851989|ref|XP_226577.2| similar to RIKEN cDNA 1110005N04 [R... 35 1.8
gi|19527184|ref|NP_598727.1| TAF5-like RNA polymerase II, p300/C... 35 1.8
gi|34854574|ref|XP_218024.2| similar to RIKEN cDNA 1110005N04 [R... 35 2.4
gi|26996521|gb|AAH41094.1| TAF5L protein [Homo sapiens] 34 4.0
gi|7657439|ref|NP_055224.1| PCAF associated factor 65 beta; TAF5... 34 4.0
gi|27469089|ref|NP_765726.1| putative anaerobic ribonucleotide r... 33 9.0
gi|27904596|ref|NP_777722.1| hypothetical protein [Buchnera aphi... 33 9.0
gi|29376772|ref|NP_815926.1| conserved hypothetical protein [Ent... 33 9.0
>gi|17509347|ref|NP_492169.1| TBP-Associated transcription Factor
family member (taf-5) [Caenorhabditis elegans]
gi|7500201|pir||T21580 hypothetical protein F30F8.8 -
Caenorhabditis elegans
gi|3876493|emb|CAB03035.1| Hypothetical protein F30F8.8
[Caenorhabditis elegans]
gi|3879143|emb|CAB05603.1| Hypothetical protein F30F8.8
[Caenorhabditis elegans]
Length = 645
Score = 540 bits (1391), Expect = e-152
Identities = 275/309 (88%), Positives = 275/309 (88%)
Frame = +1
Query: 1 MDXXXXXXXXXXXPQMFQNTHNNSAMEDNLLSRPMNNESLQMIIGYLRRNGXXXXXXXXX 180
MD PQMFQNTHNNSAMEDNLLSRPMNNESLQMIIGYLRRNG
Sbjct: 1 MDSENSSSHSISSPQMFQNTHNNSAMEDNLLSRPMNNESLQMIIGYLRRNGLTETEELLT 60
Query: 181 REAGPVLRVEGSNGLPPEEAISVEFDTFVQHANDCTDVVQAEFSQLLFPIFAHSYIALIE 360
REAGPVLRVEGSNGLPPEEAISVEFDTFVQHANDCTDVVQAEFSQLLFPIFAHSYIALIE
Sbjct: 61 REAGPVLRVEGSNGLPPEEAISVEFDTFVQHANDCTDVVQAEFSQLLFPIFAHSYIALIE 120
Query: 361 KHAATARIFFNRFKIFIPECFSEFVYQLSLIEDAMTLRANEHVHILRENKFLVRLSRPTL 540
KHAATARIFFNRFKIFIPECFSEFVYQLSLIEDAMTLRANEHVHILRENKFLVRLSRPTL
Sbjct: 121 KHAATARIFFNRFKIFIPECFSEFVYQLSLIEDAMTLRANEHVHILRENKFLVRLSRPTL 180
Query: 541 KHLESIQTRVIGVKNIIAKHICIENADEVSTNRTTIETQMGGILGVTSKSDKRHKMMFSV 720
KHLESIQTRVIGVKNIIAKHICIENADEVSTNRTTIETQMGGILGVTSKSDKRHKMMFSV
Sbjct: 181 KHLESIQTRVIGVKNIIAKHICIENADEVSTNRTTIETQMGGILGVTSKSDKRHKMMFSV 240
Query: 721 LKDELMQNIEKRXXXXXXXXXXXXXXQTHCPQADRIPLPPISEHLREERRNWLRDVGKMA 900
LKDELMQNIEKR QTHCPQADRIPLPPISEHLREERRNWLRDVGKMA
Sbjct: 241 LKDELMQNIEKRKTKGKDWKDMGKKMQTHCPQADRIPLPPISEHLREERRNWLRDVGKMA 300
Query: 901 IISAESPVS 927
IISAESPVS
Sbjct: 301 IISAESPVS 309