Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F23H11_1
(2538 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17553124|ref|NP_497287.1| putative protein (3B517) [Caenorhab... 1505 0.0
gi|32453019|gb|AAC71138.2| Hypothetical protein F23H11.2 [Caenor... 1493 0.0
gi|39586068|emb|CAE69144.1| Hypothetical protein CBG15174 [Caeno... 915 0.0
>gi|17553124|ref|NP_497287.1| putative protein (3B517) [Caenorhabditis
elegans]
gi|7499761|pir||T34064 hypothetical protein F23H11.2 - Caenorhabditis
elegans
Length = 845
Score = 1505 bits (3896), Expect = 0.0
Identities = 763/845 (90%), Positives = 763/845 (90%)
Frame = +1
Query: 1 MHSAKNEKCNACGGYRFSVNDGFKYCDRCGAXXXXXXXXXXXXXXXQQTVGQGKVKVRKN 180
MHSAKNEKCNACGGYRFSVNDGFKYCDRCGA QQTVGQGKVKVRKN
Sbjct: 1 MHSAKNEKCNACGGYRFSVNDGFKYCDRCGALFENFEELEEEEGGLQQTVGQGKVKVRKN 60
Query: 181 DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL 360
DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL
Sbjct: 61 DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL 120
Query: 361 FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV 540
FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV
Sbjct: 121 FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV 180
Query: 541 MENLRYXXXXXXXXXXXXMAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASXXXXXXXX 720
MENLRY MAKRGKGVNALSKSAAAWTLLTQGNITEHLDIAS
Sbjct: 181 MENLRYEQEEREEKQRKRMAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASDEDGDQDA 240
Query: 721 XXXXXXXXXXXETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL 900
ETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL
Sbjct: 241 QGGQQLDDLTLETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL 300
Query: 901 HSALMSSGYQTILTSDVVXXXXXXXXXXXXXXXXXXXXXQPERMKQGEVVKPTIVDYAEP 1080
HSALMSSGYQTILTSDVV QPERMKQGEVVKPTIVDYAEP
Sbjct: 301 HSALMSSGYQTILTSDVVRWIREDRFRISRRSIRLIRQSQPERMKQGEVVKPTIVDYAEP 360
Query: 1081 FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP 1260
FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP
Sbjct: 361 FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP 420
Query: 1261 CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA 1440
CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA
Sbjct: 421 CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA 480
Query: 1441 KXXXXXXXXXXXXXXXDNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV 1620
K DNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV
Sbjct: 481 KLIAYLLLTLRLTFQLDNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV 540
Query: 1621 PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL 1800
PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL
Sbjct: 541 PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL 600
Query: 1801 LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE 1980
LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE
Sbjct: 601 LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE 660
Query: 1981 EYFPCAKNYLVTGPIRFYLSNQSCDDLLGTAATSFSRRFQFLLDALSLIIGEDKKAVYAA 2160
EYFPCAKNYLVTGPIRFYLSNQSCDDLLGTAATSFSRRFQFLLDALSLIIGEDKKAVYAA
Sbjct: 661 EYFPCAKNYLVTGPIRFYLSNQSCDDLLGTAATSFSRRFQFLLDALSLIIGEDKKAVYAA 720
Query: 2161 FVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHHIPRKYGVISEVPIDRIENLR 2340
FVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHHIPRKYGVISEVPIDRIENLR
Sbjct: 721 FVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHHIPRKYGVISEVPIDRIENLR 780
Query: 2341 YFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQRAQNRIMKLCYEFEQFFGIL 2520
YFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQRAQNRIMKLCYEFEQFFGIL
Sbjct: 781 YFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQRAQNRIMKLCYEFEQFFGIL 840
Query: 2521 AVKFW 2535
AVKFW
Sbjct: 841 AVKFW 845
>gi|32453019|gb|AAC71138.2| Hypothetical protein F23H11.2
[Caenorhabditis elegans]
Length = 865
Score = 1493 bits (3865), Expect = 0.0
Identities = 763/865 (88%), Positives = 763/865 (88%), Gaps = 20/865 (2%)
Frame = +1
Query: 1 MHSAKNEKCNACGGYRFSVNDGFKYCDRCGAXXXXXXXXXXXXXXXQQTVGQGKVKVRKN 180
MHSAKNEKCNACGGYRFSVNDGFKYCDRCGA QQTVGQGKVKVRKN
Sbjct: 1 MHSAKNEKCNACGGYRFSVNDGFKYCDRCGALFENFEELEEEEGGLQQTVGQGKVKVRKN 60
Query: 181 DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL 360
DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL
Sbjct: 61 DDQKRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRL 120
Query: 361 FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV 540
FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV
Sbjct: 121 FSFTQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAV 180
Query: 541 MENLRYXXXXXXXXXXXXMAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASXXXXXXXX 720
MENLRY MAKRGKGVNALSKSAAAWTLLTQGNITEHLDIAS
Sbjct: 181 MENLRYEQEEREEKQRKRMAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASDEDGDQDA 240
Query: 721 XXXXXXXXXXXETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL 900
ETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL
Sbjct: 241 QGGQQLDDLTLETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAIL 300
Query: 901 HSALMSSGYQTILTSDVVXXXXXXXXXXXXXXXXXXXXXQPERMKQGEVVKPTIVDYAEP 1080
HSALMSSGYQTILTSDVV QPERMKQGEVVKPTIVDYAEP
Sbjct: 301 HSALMSSGYQTILTSDVVRWIREDRFRISRRSIRLIRQSQPERMKQGEVVKPTIVDYAEP 360
Query: 1081 FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP 1260
FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP
Sbjct: 361 FLRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIP 420
Query: 1261 CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA 1440
CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA
Sbjct: 421 CDVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDA 480
Query: 1441 KXXXXXXXXXXXXXXXDNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV 1620
K DNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV
Sbjct: 481 KLIAYLLLTLRLTFQLDNAQCALQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSHV 540
Query: 1621 PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL 1800
PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL
Sbjct: 541 PEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMGL 600
Query: 1801 LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE 1980
LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE
Sbjct: 601 LTERCQMEALISPVKFQRTVLGNEIERDPLTFENVDRQSKNTFFKHFSAFKTTESCDTFE 660
Query: 1981 EYFPCAKNYL--------------------VTGPIRFYLSNQSCDDLLGTAATSFSRRFQ 2100
EYFPCAKNYL VTGPIRFYLSNQSCDDLLGTAATSFSRRFQ
Sbjct: 661 EYFPCAKNYLLFKRPDWIQNCTARQTHFNPVTGPIRFYLSNQSCDDLLGTAATSFSRRFQ 720
Query: 2101 FLLDALSLIIGEDKKAVYAAFVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHH 2280
FLLDALSLIIGEDKKAVYAAFVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHH
Sbjct: 721 FLLDALSLIIGEDKKAVYAAFVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHH 780
Query: 2281 IPRKYGVISEVPIDRIENLRYFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQ 2460
IPRKYGVISEVPIDRIENLRYFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQ
Sbjct: 781 IPRKYGVISEVPIDRIENLRYFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQ 840
Query: 2461 RAQNRIMKLCYEFEQFFGILAVKFW 2535
RAQNRIMKLCYEFEQFFGILAVKFW
Sbjct: 841 RAQNRIMKLCYEFEQFFGILAVKFW 865
>gi|39586068|emb|CAE69144.1| Hypothetical protein CBG15174
[Caenorhabditis briggsae]
Length = 843
Score = 915 bits (2366), Expect = 0.0
Identities = 469/847 (55%), Positives = 588/847 (69%), Gaps = 7/847 (0%)
Frame = +1
Query: 16 NEKCNACGGYRFSVNDGFKYCDRCGAXXXXXXXXXXXXXXXQQTVGQGKVKVRKN--DDQ 189
NEKC ACGG+ FS+ DGFKYCDRCG QQT G GK+K++K DD
Sbjct: 1 NEKCKACGGFNFSMIDGFKYCDRCGTLLENFEELEAEEGGIQQTRGAGKIKIKKKGGDDG 60
Query: 190 KRVRNNAAPVNLPKAQVMREALEKRSDFLQQQAIKGEELELPHDATPDYLYRLALRLFSF 369
++ N N Q+MR+ALEKRSDF +QA+K +EL PH++TPDYLYRL LRL +F
Sbjct: 61 EKKTTNLVSTNESNVQIMRKALEKRSDFFSRQALKNDELAFPHESTPDYLYRLGLRLAAF 120
Query: 370 TQILAKSGHILVHELNFESRVQENILATFQKYLAHCQVAFCHSEQCGNDEHLRFVAVMEN 549
TQ+LAK GH+LV ELNFE RV ILATFQ+YLAHC VAFCHSEQCG+DE LRFVA+MEN
Sbjct: 121 TQVLAKVGHVLVKELNFEPRVLPTILATFQRYLAHCHVAFCHSEQCGSDEQLRFVAMMEN 180
Query: 550 LRYXXXXXXXXXXXXMAKRGKGVNALSKSAAAWTLLTQGNITEHLDIASXXXXXXXXX-- 723
L + +A+RGKGV ALSKSAAAWTLLTQGNITE+LD+ S
Sbjct: 181 LEFEQQEREEKRRKKLARRGKGVKALSKSAAAWTLLTQGNITENLDLDSEEDEEEEENPN 240
Query: 724 XXXXXXXXXXETTQNPDESIRVNDTTMGFVRKVTTALSKEALRRASQLILNLEMLVAILH 903
E TQN DE++ VNDTT+GFVRK+TTALS EALRRA Q+ILNLE+LVAI+H
Sbjct: 241 LNKSMENLEFEDTQN-DETVAVNDTTVGFVRKITTALSTEALRRARQMILNLEILVAIIH 299
Query: 904 SALMSSGYQTILTSDVVXXXXXXXXXXXXXXXXXXXXXQPERMKQGEVVKPTIVDYAEPF 1083
SALMS GY+ +L SDVV E+ + + K VDYAEP+
Sbjct: 300 SALMSCGYRNVLASDVVRWIREDRFRISLRSIRLMRHSAKEQETKEAMTK---VDYAEPY 356
Query: 1084 LRFPLYEIMRTCTIFHQSLKLASSMAPQSFESMSARLVDNLNLPSDILSRMLILESIIPC 1263
LRFPLYEI RT T+FHQSL L + +FE+++ARL DNLNLP + LSR+L+LES+IPC
Sbjct: 357 LRFPLYEITRTSTLFHQSLNLNEKLVSLNFETLAARLCDNLNLPVEFLSRVLLLESMIPC 416
Query: 1264 DVSPQLLKQVDVDMGYNCGQLAAMSPNVYYSGFLTSFGRKERGTQDADFCDEVLLSPDAK 1443
DV+P L KQ DV MG+NC QLAA+ P +Y SGFL+ FGRKER ++AD CDEVLLSPD K
Sbjct: 417 DVNPSLRKQADVSMGHNCEQLAAIQPKLYNSGFLSCFGRKERTWREADNCDEVLLSPDTK 476
Query: 1444 XXXXXXXXXXXXXXXDNAQCA--LQDDQYFDVDSWIHQLEMRIKCWQGHNMSLVMRSSSH 1617
DNA C+ +D FD+D+WIHQLEMR+KCWQ H+MS+V+RSS
Sbjct: 477 LMAYILLVFRLTFDIDNATCSPDSKDALKFDIDTWIHQLEMRLKCWQEHDMSMVLRSSCP 536
Query: 1618 VPEMVVDPPFGTNYLFHQEKGAPQVSCRRRQAGFQKCIPTEMSFNSTSTLPTVFDVRHMG 1797
VP++ + PFG NY ++ +KG P V RRQ GF KCIP+EMSFNSTS+LPTVFD+R
Sbjct: 537 VPDIQISTPFGPNYSYYDKKGNPWVHRLRRQVGFAKCIPSEMSFNSTSSLPTVFDIRQNR 596
Query: 1798 LLTERCQMEALISPVKFQRTVLGNEIERDPLTFEN-VDRQSKNTFFKHFSAFKTTESCDT 1974
TER Q+EA++SP+KFQR +L E+ERDP + N VD S+ TFFK F+ K E+ ++
Sbjct: 597 FKTERRQLEAVMSPLKFQRVILRKEMERDPEKYRNIVDPDSEKTFFKDFTTQKIAETSNS 656
Query: 1975 FEEYFPCAKNYLVTGPIRFYLSNQSCDDLLGTAATSFSRRFQFLLDALSLIIGEDKKAVY 2154
F+EYFPCA Y GP RFY+SNQ+CDDLLG A +SFS RF+FLLD+L+LIIGED KA+Y
Sbjct: 657 FDEYFPCASRYTKIGPYRFYISNQACDDLLGVATSSFSPRFKFLLDSLALIIGEDPKALY 716
Query: 2155 AAFVMLEMHLTSSERIQSIRDDLLTSSPITLKCQKFRNSTHHIPRKYGVISEVPIDRIEN 2334
AFVMLEMHLTSS+ +++IR+ LL S PIT+KCQKFR + H+ V++E P+ +IE+
Sbjct: 717 TAFVMLEMHLTSSDTLETIRESLLRSKPITVKCQKFRKTMWHVECLRRVVTEHPVGKIED 776
Query: 2335 LRYFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTETEVQRAQNRIMKLCYEFEQFFG 2514
L+YF ++ EE+ + L+ +RN EIR+ +T E ++ QNR++KL Y+FE FFG
Sbjct: 777 LKYFIVASTRESQEELAESSEAYLMHFRNHEIREDLTSLEAEKVQNRVLKLAYDFETFFG 836
Query: 2515 ILAVKFW 2535
ILAVK W
Sbjct: 837 ILAVKMW 843
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
Posted date: Aug 11, 2004 12:04 AM
Number of letters in database: 661,712,633
Number of sequences in database: 1,967,186
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,717,406,926
Number of Sequences: 1967186
Number of extensions: 54925491
Number of successful extensions: 140180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140143
length of database: 661,712,633
effective HSP length: 135
effective length of database: 396,142,523
effective search space used: 281261191330
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)