Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= F14B4_3
(3384 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17506623|ref|NP_492476.1| RNA polymerase (1J858) [Caenorhabdi... 2251 0.0
gi|39581303|emb|CAE72324.1| Hypothetical protein CBG19469 [Caeno... 2076 0.0
gi|38614338|gb|AAH60656.1| RNA polymerase I polypeptide B [Mus m... 986 0.0
gi|6677789|ref|NP_033112.1| RNA polymerase I polypeptide B; RNA ... 981 0.0
gi|33469941|ref|NP_061887.2| RNA polymerase I polypeptide B; DNA... 976 0.0
gi|34535223|dbj|BAC87247.1| unnamed protein product [Homo sapiens] 971 0.0
gi|37589362|gb|AAH59304.1| MGC68946 protein [Xenopus laevis] 969 0.0
gi|48099272|ref|XP_394883.1| similar to CG4033-PA [Apis mellifera] 946 0.0
gi|13959476|sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I 1... 935 0.0
gi|47209534|emb|CAF89806.1| unnamed protein product [Tetraodon n... 917 0.0
gi|13929088|ref|NP_113961.1| RNA polymerase 1-2; RNA polymerase ... 911 0.0
gi|50756081|ref|XP_415007.1| PREDICTED: similar to RNA polymeras... 892 0.0
gi|31202407|ref|XP_310152.1| ENSANGP00000020031 [Anopheles gambi... 884 0.0
gi|19112611|ref|NP_595819.1| DNA-directed RNA polymerase subunit... 874 0.0
gi|17136446|ref|NP_476708.1| CG4033-PA [Drosophila melanogaster]... 874 0.0
gi|133318|sp|P20028|RPA2_DROME DNA-DIRECTED RNA POLYMERASE I 135... 874 0.0
gi|46442218|gb|EAL01509.1| hypothetical protein CaO19.7062 [Cand... 860 0.0
gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780 [Crypto... 850 0.0
gi|50552684|ref|XP_503752.1| hypothetical protein [Yarrowia lipo... 849 0.0
gi|50425489|ref|XP_461338.1| unnamed protein product [Debaryomyc... 848 0.0
gi|49093218|ref|XP_408070.1| hypothetical protein AN3933.2 [Aspe... 839 0.0
gi|49068918|ref|XP_398748.1| hypothetical protein UM01133.1 [Ust... 836 0.0
gi|50303741|ref|XP_451816.1| unnamed protein product [Kluyveromy... 834 0.0
gi|6325267|ref|NP_015335.1| RNA polymerase I subunit A135; Rpa13... 833 0.0
gi|50290705|ref|XP_447785.1| unnamed protein product [Candida gl... 827 0.0
gi|32418524|ref|XP_329740.1| DNA-DIRECTED RNA POLYMERASE I POLYP... 821 0.0
gi|14285745|sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I p... 819 0.0
gi|38110159|gb|EAA55921.1| hypothetical protein MG01572.4 [Magna... 803 0.0
gi|1350832|sp|P28365|RPA2_EUPOC DNA-DIRECTED RNA POLYMERASE I SE... 801 0.0
gi|45185258|ref|NP_982975.1| ABR029Wp [Eremothecium gossypii] >g... 791 0.0
gi|46122499|ref|XP_385803.1| hypothetical protein FG05627.1 [Gib... 747 0.0
gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens] 727 0.0
gi|18397295|ref|NP_564341.1| DNA-directed RNA polymerase family ... 701 0.0
gi|9972352|gb|AAG10602.1| Similar to DNA-directed RNA polymerase... 699 0.0
gi|46227419|gb|EAK88354.1| RNA polymerase 1 beta subunit [Crypto... 657 0.0
gi|37535682|ref|NP_922143.1| putative DNA-directed RNA polymeras... 637 0.0
gi|39644698|gb|AAH04882.4| POLR1B protein [Homo sapiens] 593 e-167
gi|19173004|ref|NP_597555.1| DNA-DIRECTED RNA POLYMERASE I, SECO... 590 e-167
gi|49522875|gb|AAH73857.1| Unknown (protein for IMAGE:3867133) [... 579 e-163
gi|22128702|gb|AAM92814.1| putative DNA-directed RNA polymerase ... 575 e-162
gi|24370467|emb|CAC70148.1| putative RNA polymerase B [Brugia ma... 549 e-154
gi|13812008|ref|NP_113138.1| DNA-directed RNA polymerase I 135K ... 509 e-142
gi|10438131|dbj|BAB15175.1| unnamed protein product [Homo sapiens] 482 e-134
gi|15208247|dbj|BAB63148.1| hypothetical protein [Macaca fascicu... 439 e-121
gi|50546993|ref|XP_500966.1| hypothetical protein [Yarrowia lipo... 419 e-115
gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon n... 418 e-115
gi|29428029|sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III... 418 e-115
gi|39591730|emb|CAE71308.1| Hypothetical protein CBG18197 [Caeno... 417 e-115
gi|46195739|ref|NP_081699.1| RNA polymerase III subunit RPC2; RN... 417 e-115
gi|42476127|ref|NP_060552.3| polymerase (RNA) III (DNA directed)... 417 e-115
gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit... 417 e-115
gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo... 417 e-114
gi|17552304|ref|NP_498047.1| RNA polymerase II subunit (3G33) [C... 416 e-114
gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit... 415 e-114
gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Cand... 409 e-112
gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase, subuni... 407 e-111
gi|42568328|ref|NP_199327.3| DNA-directed RNA polymerase, putati... 405 e-111
gi|401018|sp|P31814|RPOB_THECE DNA-directed RNA polymerase subun... 405 e-111
gi|24418911|ref|NP_722493.1| polymerase (RNA) II (DNA directed) ... 405 e-111
gi|4505941|ref|NP_000929.1| DNA directed RNA polymerase II polyp... 405 e-111
gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECO... 402 e-110
gi|172383|gb|AAB59324.1| RNA polymerase III 400 e-109
gi|49071544|ref|XP_400061.1| hypothetical protein UM02446.1 [Ust... 400 e-109
gi|6324781|ref|NP_014850.1| second-largest subunit of RNA polyme... 399 e-109
gi|19913065|emb|CAD26832.1| RNA polymerase I second largest subu... 397 e-109
gi|38109454|gb|EAA55327.1| hypothetical protein MG06984.4 [Magna... 397 e-109
gi|9759599|dbj|BAB11387.1| DNA-directed RNA polymerase subunit [... 397 e-109
gi|45187598|ref|NP_983821.1| ADL275Cp [Eremothecium gossypii] >g... 396 e-108
gi|34876743|ref|XP_214021.2| similar to DNA-directed RNA polymer... 396 e-108
gi|7434757|pir||T16011 hypothetical protein F09F7.3 - Caenorhabd... 396 e-108
gi|25144348|ref|NP_498192.2| rna polymerase (129.1 kD) (3G653) [... 396 e-108
gi|17647877|ref|NP_523706.1| CG8344-PA [Drosophila melanogaster]... 395 e-108
gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster] 395 e-108
gi|50549809|ref|XP_502376.1| hypothetical protein [Yarrowia lipo... 394 e-108
gi|50310217|ref|XP_455128.1| unnamed protein product [Kluyveromy... 394 e-107
gi|17136444|ref|NP_476706.1| CG3180-PA [Drosophila melanogaster]... 393 e-107
gi|50256624|gb|EAL19347.1| hypothetical protein CNBH0410 [Crypto... 392 e-107
gi|84936|pir||A27826 DNA-directed RNA polymerase (EC 2.7.7.6) II... 391 e-107
gi|31223468|ref|XP_317312.1| ENSANGP00000006850 [Anopheles gambi... 391 e-107
gi|31208899|ref|XP_313416.1| ENSANGP00000011389 [Anopheles gambi... 390 e-107
gi|133361|sp|P25167|RPC2_DROME DNA-DIRECTED RNA POLYMERASE III 1... 389 e-106
gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sa... 389 e-106
gi|50292925|ref|XP_448895.1| unnamed protein product [Candida gl... 389 e-106
gi|19114602|ref|NP_593690.1| putative dna-directed rna polymeras... 388 e-106
gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gib... 388 e-106
gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster] 387 e-106
gi|11134656|sp|Q42877|RPB2_LYCES DNA-directed RNA polymerase II ... 387 e-105
gi|45198922|ref|NP_985951.1| AFR404Cp [Eremothecium gossypii] >g... 382 e-104
gi|50427879|ref|XP_462552.1| unnamed protein product [Debaryomyc... 382 e-104
gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta sub... 382 e-104
gi|39579599|emb|CAE56370.1| Hypothetical protein CBG24045 [Caeno... 381 e-104
gi|50303683|ref|XP_451784.1| unnamed protein product [Kluyveromy... 380 e-103
gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subun... 379 e-103
gi|32415463|ref|XP_328211.1| probable DNA-directed RNA polymeras... 379 e-103
gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUB... 379 e-103
gi|49084532|ref|XP_404458.1| hypothetical protein AN0321.2 [Aspe... 378 e-103
gi|133422|sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subun... 378 e-103
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosp... 377 e-102
gi|15920466|ref|NP_376135.1| 1126aa long hypothetical DNA-direct... 377 e-102
gi|6324725|ref|NP_014794.1| RNA polymerase II core subunit; Rpb2... 376 e-102
gi|479866|pir||S35548 DNA-directed RNA polymerase (EC 2.7.7.6) I... 376 e-102
gi|19862286|sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II ... 376 e-102
gi|50293059|ref|XP_448959.1| unnamed protein product [Candida gl... 375 e-102
gi|2133437|pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) ... 374 e-102
gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit 373 e-101
gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB1... 372 e-101
gi|32407978|ref|XP_324477.1| hypothetical protein [Neurospora cr... 372 e-101
gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon n... 371 e-101
gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit... 370 e-101
gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II 135 ... 370 e-100
gi|16486|emb|CAA79528.1| RNA polymerase II second largest subuni... 369 e-100
gi|16488|emb|CAA79527.1| RNA polymerase II second largest subuni... 369 e-100
gi|45545309|gb|AAS67502.1| DNA-dependent RNA polymerase II secon... 368 e-100
gi|23480386|gb|EAA16959.1| DNA-directed RNA polymerase, beta sub... 366 2e-99
gi|9366586|emb|CAB95348.1| DNA-directed RNA polymerase III, prob... 365 4e-99
gi|13812128|ref|NP_113255.1| DNA-directed RNA polymerase II seco... 361 6e-98
gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subu... 360 1e-97
gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit... 358 6e-97
gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Crypto... 357 8e-97
gi|50746617|ref|XP_420578.1| PREDICTED: similar to DNA-directed ... 356 2e-96
gi|29248350|gb|EAA39886.1| GLP_77_51414_47707 [Giardia lamblia A... 351 8e-95
gi|48477331|ref|YP_023037.1| DNA-directed RNA polymerase subunit... 347 1e-93
gi|48852481|ref|ZP_00306667.1| COG0085: DNA-directed RNA polymer... 338 7e-91
gi|16081519|ref|NP_393870.1| probable DNA-directed RNA polymeras... 336 2e-90
gi|13542013|ref|NP_111701.1| DNA-directed RNA polymerase, subuni... 332 3e-89
gi|13811985|ref|NP_113114.1| second-largest subunit of RNA polym... 322 5e-86
gi|49134926|ref|XP_413257.1| hypothetical protein AN9120.2 [Aspe... 312 4e-83
gi|9293951|dbj|BAB01854.1| DNA-directed RNA polymerase, subunit ... 308 7e-82
gi|6606109|gb|AAF19067.1| DNA-dependent RNA polymerase II RPB140... 303 1e-80
gi|29251063|gb|EAA42548.1| GLP_165_27627_23911 [Giardia lamblia ... 303 2e-80
gi|15229585|ref|NP_188437.1| DNA-directed RNA polymerase family ... 301 9e-80
gi|6606105|gb|AAF19065.1| DNA-dependent RNA polymerase II RPB140... 300 1e-79
gi|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit [Hom... 299 3e-79
gi|9294064|dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arab... 296 2e-78
gi|32470653|gb|AAP45179.1| putative DNA-directed RNA polymerase ... 293 2e-77
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Cand... 291 7e-77
gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II secon... 291 9e-77
gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II secon... 290 1e-76
gi|6606131|gb|AAF19078.1| DNA-dependent RNA polymerase II RPB140... 290 2e-76
gi|133460|sp|P09845|RPB1_METTW DNA-directed RNA polymerase subun... 289 3e-76
gi|6606117|gb|AAF19071.1| DNA-dependent RNA polymerase II RPB140... 289 3e-76
gi|15897172|ref|NP_341777.1| DNA-directed RNA polymerase, subuni... 288 8e-76
gi|11261332|pir||T43701 DNA-directed RNA polymerase (EC 2.7.7.6)... 288 8e-76
gi|13492590|gb|AAK28286.1| DNA-directed RNA polymerase III [Leis... 286 2e-75
gi|15679063|ref|NP_276180.1| DNA-dependent RNA polymerase, subun... 286 2e-75
gi|38104378|gb|EAA50955.1| hypothetical protein MG04714.4 [Magna... 286 2e-75
gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit 285 5e-75
gi|38347314|emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa (japon... 285 5e-75
gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus] 284 9e-75
gi|38344903|emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa (japon... 282 3e-74
gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II large... 282 3e-74
gi|6606093|gb|AAF19059.1| DNA-dependent RNA polymerase II RPB140... 281 1e-73
gi|11261302|pir||T50175 dna-directed rna polymerase ii 138 kd po... 281 1e-73
gi|6606113|gb|AAF19069.1| DNA-dependent RNA polymerase II RPB140... 280 1e-73
gi|6606137|gb|AAF19081.1| DNA-dependent RNA polymerase II RPB140... 280 2e-73
gi|15079139|ref|NP_149891.1| 428L [Invertebrate iridescent virus... 279 4e-73
gi|6606139|gb|AAF19082.1| DNA-dependent RNA polymerase II RPB140... 279 4e-73
gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit 278 6e-73
gi|6606101|gb|AAF19063.1| DNA-dependent RNA polymerase II RPB140... 278 8e-73
gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subun... 277 1e-72
gi|15229516|ref|NP_189020.1| DNA-directed RNA polymerase family ... 276 3e-72
gi|6606103|gb|AAF19064.1| DNA-dependent RNA polymerase II RPB140... 275 4e-72
gi|40253865|dbj|BAD05800.1| putative DNA-dependent RNA polymeras... 275 4e-72
gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heter... 273 3e-71
gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II secon... 271 8e-71
gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II secon... 271 1e-70
gi|15791389|ref|NP_281213.1| DNA-directed RNA polymerase subunit... 270 2e-70
gi|6606089|gb|AAF19057.1| DNA-dependent RNA polymerase II RPB140... 268 5e-70
gi|21842205|gb|AAM77733.1| RNA polymerase II subunit Rpb2 [Giard... 268 5e-70
gi|1173132|sp|P41557|RPB1_METVA DNA-directed RNA polymerase subu... 268 5e-70
gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II secon... 267 1e-69
gi|40643998|emb|CAD91516.1| RNA polymerase II second largest sub... 266 2e-69
gi|48840818|ref|ZP_00297744.1| COG0085: DNA-directed RNA polymer... 266 2e-69
gi|11499471|ref|NP_070712.1| DNA-directed RNA polymerase, subuni... 266 3e-69
gi|20094124|ref|NP_613971.1| DNA-directed RNA polymerase second-... 265 4e-69
gi|6606091|gb|AAF19058.1| DNA-dependent RNA polymerase II RPB140... 265 6e-69
gi|13358406|ref|NP_078633.1| DNA-directed RNA polymerase subunit... 265 7e-69
gi|20090128|ref|NP_616203.1| DNA-directed RNA polymerase, subuni... 265 7e-69
gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II secon... 264 9e-69
gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II secon... 263 2e-68
gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II secon... 263 2e-68
gi|21228374|ref|NP_634296.1| DNA-directed RNA polymerase beta ch... 263 2e-68
gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subu... 260 1e-67
gi|15669230|ref|NP_248035.1| DNA-directed RNA polymerase, subuni... 260 1e-67
gi|45358925|ref|NP_988482.1| Glycoside hydrolase, family 1:DNA-d... 259 2e-67
gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II secon... 259 2e-67
gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subu... 259 4e-67
gi|41719517|ref|ZP_00148403.1| COG0085: DNA-directed RNA polymer... 259 4e-67
gi|6606097|gb|AAF19061.1| DNA-dependent RNA polymerase II RPB140... 257 2e-66
gi|34862418|ref|XP_343189.1| similar to RNA polymerase III subun... 257 2e-66
gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II secon... 257 2e-66
gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II secon... 256 2e-66
gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subu... 256 3e-66
gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II secon... 255 6e-66
gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II secon... 254 1e-65
gi|46142986|gb|AAS80336.1| RNA polymerase II [Gibberella monilif... 254 1e-65
gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II secon... 254 1e-65
gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subu... 253 2e-65
gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subu... 253 3e-65
gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II secon... 252 4e-65
gi|11261330|pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6)... 252 4e-65
gi|3002941|gb|AAC08961.1| RNA polymerase II second largest subun... 251 1e-64
gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II secon... 250 2e-64
gi|50728836|ref|XP_416307.1| PREDICTED: similar to DNA-directed ... 249 2e-64
gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subu... 249 2e-64
gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subu... 249 2e-64
gi|11261324|pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6)... 249 3e-64
gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2 [Echin... 248 9e-64
gi|11261334|pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6)... 248 9e-64
gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II secon... 248 9e-64
gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckel... 247 1e-63
gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II secon... 247 1e-63
gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II secon... 246 2e-63
gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subu... 246 3e-63
gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subu... 246 3e-63
gi|19881439|ref|NP_612256.1| putative DNA-directed RNA polymeras... 245 5e-63
gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II secon... 243 2e-62
gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subu... 243 3e-62
gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II secon... 243 3e-62
gi|6606133|gb|AAF19079.1| DNA-dependent RNA polymerase II RPB140... 243 3e-62
gi|6606107|gb|AAF19066.1| DNA-dependent RNA polymerase II RPB140... 241 7e-62
gi|2736123|gb|AAB94062.1| RPB140 [Aristolochia gigantea] 241 9e-62
gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest su... 241 1e-61
gi|6606127|gb|AAF19076.1| DNA-dependent RNA polymerase II RPB140... 241 1e-61
gi|40643888|emb|CAD88887.1| DNA-directed RNA polymerase subunit ... 240 2e-61
gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II secon... 239 3e-61
gi|6606099|gb|AAF19062.1| DNA-dependent RNA polymerase II RPB140... 239 3e-61
gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II secon... 239 3e-61
gi|11261328|pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6)... 239 3e-61
gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest su... 238 6e-61
gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Ox... 238 6e-61
gi|46277287|gb|AAS86834.1| RNA polymerase II second largest subu... 238 6e-61
gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus] 238 7e-61
gi|3002939|gb|AAC08960.1| RNA polymerase II second largest subun... 237 1e-60
gi|11261326|pir||T43844 DNA-directed RNA polymerase (EC 2.7.7.6)... 237 1e-60
gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subu... 237 2e-60
gi|6606121|gb|AAF19073.1| DNA-dependent RNA polymerase II RPB140... 237 2e-60
gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subu... 236 2e-60
gi|40644994|emb|CAD88980.1| DNA-directed RNA polymerase subunit ... 236 2e-60
gi|6606123|gb|AAF19074.1| DNA-dependent RNA polymerase II RPB140... 236 2e-60
gi|6606125|gb|AAF19075.1| DNA-dependent RNA polymerase II RPB140... 236 3e-60
gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subu... 235 5e-60
gi|6606115|gb|AAF19070.1| DNA-dependent RNA polymerase II RPB140... 235 5e-60
gi|6606129|gb|AAF19077.1| DNA-dependent RNA polymerase II RPB140... 235 5e-60
gi|6606135|gb|AAF19080.1| DNA-dependent RNA polymerase II RPB140... 235 5e-60
gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II secon... 234 8e-60
gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit ... 234 8e-60
gi|46277255|gb|AAS86818.1| RNA polymerase II second largest subu... 234 1e-59
gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest su... 234 1e-59
gi|6606119|gb|AAF19072.1| DNA-dependent RNA polymerase II RPB140... 234 1e-59
gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subu... 233 2e-59
gi|45545319|gb|AAS67507.1| DNA-dependent RNA polymerase II secon... 233 2e-59
gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II secon... 232 4e-59
gi|6606111|gb|AAF19068.1| DNA-dependent RNA polymerase II RPB140... 232 5e-59
gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit ... 231 9e-59
gi|23508549|ref|NP_701218.1| DNA-directed RNA polymerase, beta s... 230 2e-58
gi|40644720|emb|CAD92662.1| RNA polymerase II [Lycopersicon escu... 230 2e-58
gi|41614952|ref|NP_963450.1| NEQ156 [Nanoarchaeum equitans Kin4-... 229 4e-58
gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2 [Lycop... 228 6e-58
gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2 [Bonda... 228 8e-58
gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subu... 228 8e-58
gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2 [Henni... 228 1e-57
gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subu... 226 2e-57
gi|46277265|gb|AAS86823.1| RNA polymerase II second largest subu... 226 2e-57
gi|45545325|gb|AAS67510.1| DNA-dependent RNA polymerase II secon... 226 2e-57
gi|40641904|emb|CAD88602.1| RNA polymerase II second largest sub... 226 2e-57
gi|46277279|gb|AAS86830.1| RPB140 [Liquidambar acalycina] 226 3e-57
gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subu... 226 3e-57
gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subu... 226 4e-57
gi|40643996|emb|CAD91515.1| RNA polymerase II second largest sub... 225 6e-57
gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subu... 225 6e-57
gi|23508763|ref|NP_701431.1| DNA-directed RNA polymerase III sub... 224 8e-57
gi|40644047|emb|CAD98811.1| RNA polymerase II, second largest su... 219 3e-55
gi|9628161|ref|NP_042747.1| RNA polymerase subunit 2 [African sw... 218 1e-54
gi|38014674|gb|AAH60458.1| MGC68569 protein [Xenopus laevis] 216 2e-54
gi|45120574|gb|AAO64669.2| RNA polymerase II subunit RPB2 [Phleb... 215 5e-54
gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II secon... 213 3e-53
gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subu... 213 3e-53
gi|7023086|dbj|BAA91831.1| unnamed protein product [Homo sapiens] 212 4e-53
gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2 [Stere... 209 5e-52
gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II secon... 208 6e-52
gi|40645025|emb|CAD92461.1| RNA polymerase II [Valeriana officin... 208 8e-52
gi|6606095|gb|AAF19060.1| DNA-dependent RNA polymerase II RPB140... 207 2e-51
gi|23593315|ref|NP_473071.2| DNA-directed RNA polymerase II seco... 207 2e-51
gi|7434755|pir||B71608 DNA-directed RNA polymerase (EC 2.7.7.6) ... 207 2e-51
gi|40644553|emb|CAD89518.1| RNA polymerase II second largest sub... 207 2e-51
gi|45120570|gb|AAO64659.2| RNA polymerase II subunit RPB2 [Gauti... 206 4e-51
gi|8489819|gb|AAF75766.1| DNA-directed RNA polymerase II polypep... 204 1e-50
gi|40644555|emb|CAD89596.1| RNA polymerase II, second largest su... 203 3e-50
gi|46277291|gb|AAS86836.1| RNA polymerase II second largest subu... 202 6e-50
gi|45686052|ref|YP_003815.1| DNA dependent RNA polymerase II [Re... 202 6e-50
gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta sub... 199 5e-49
gi|40643899|emb|CAD89688.1| RNA polymerase II, second largest su... 198 6e-49
gi|40642974|emb|CAD89599.1| RNA polymerase II, second largest su... 198 6e-49
gi|40642972|emb|CAD89598.1| RNA polymerase II, second largest su... 198 6e-49
gi|14587115|gb|AAK70486.1| RNA polymerase I subunit 2 [Blepharis... 196 2e-48
gi|45330863|gb|AAS57792.1| RNA polymerase II second largest subu... 196 3e-48
gi|4867793|emb|CAB43061.1| RNA polymerase II [Buddleja asiatica] 189 4e-46
gi|40644996|emb|CAD88981.1| DNA-directed RNA polymerase subunit ... 189 5e-46
gi|4867872|emb|CAB43073.1| RNA polymerase II [Mussaenda erythrop... 187 1e-45
gi|3746592|gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea b... 187 1e-45
gi|4867897|emb|CAB43086.1| RNA polymerase II [Strychnos potatorum] 187 2e-45
gi|4867858|emb|CAB43085.1| RNA polymerase II [Stephanotis florib... 187 2e-45
gi|3746594|gb|AAC64012.1| RNA polymerase II subunit 2 [Periploca... 186 3e-45
gi|4867870|emb|CAB43084.1| RNA polymerase II [Spigelia anthelmia] 186 3e-45
gi|4867878|emb|CAB43080.1| RNA polymerase II [Pinckneya pubescens] 186 3e-45
gi|4867866|emb|CAB43074.1| RNA polymerase II [Mitreola petiolata] 186 4e-45
gi|4867862|emb|CAB43072.1| RNA polymerase II [Logania vaginalis] 186 4e-45
gi|4867819|emb|CAB43068.1| RNA polymerase II [Gardenia thunbergia] 186 4e-45
gi|4867899|emb|CAB43088.1| RNA polymerase II [Usteria guineensis] 186 4e-45
gi|4867807|emb|CAB43064.1| RNA polymerase II [Chiococca racemosa] 185 6e-45
gi|4867854|emb|CAB43082.1| RNA polymerase II [Retzia capensis] 185 6e-45
gi|4867856|emb|CAB43079.1| RNA polymerase II [Peltanthera florib... 185 7e-45
gi|3746596|gb|AAC64013.1| RNA polymerase II subunit 2 [Chironia ... 185 7e-45
gi|4867813|emb|CAB43067.1| RNA polymerase II [Gelsemium sempervi... 184 1e-44
gi|7022389|dbj|BAA91581.1| unnamed protein product [Homo sapiens] 184 1e-44
gi|4867876|emb|CAB43078.1| RNA polymerase II [Ophiorrhiza mungos] 184 1e-44
gi|4867817|emb|CAB43066.1| RNA polymerase II [Gardneria angustif... 184 2e-44
gi|4867880|emb|CAB43083.1| RNA polymerase II [Rondeletia odorata] 184 2e-44
gi|4867799|emb|CAB43059.1| RNA polymerase II [Antonia ovata] 184 2e-44
gi|4867795|emb|CAB43060.1| RNA polymerase II [Alstonia scholaris] 183 2e-44
gi|4867797|emb|CAB43058.1| RNA polymerase II [Anthocleista grand... 183 2e-44
gi|4867874|emb|CAB43077.1| RNA polymerase II [Oldenlandia corymb... 183 3e-44
gi|7022241|dbj|BAA91527.1| unnamed protein product [Homo sapiens] 182 5e-44
gi|3746598|gb|AAC64014.1| RNA polymerase II subunit 2 [Kopsia fr... 182 6e-44
gi|4867815|emb|CAB43065.1| RNA polymerase II [Fagraea sp. Bremer... 181 1e-43
gi|4867895|emb|CAB43089.1| RNA polymerase II [Wrightia arborea] 181 1e-43
gi|4867893|emb|CAB43087.1| RNA polymerase II [Sanango racemosum] 181 1e-43
gi|40644724|emb|CAD92664.1| RNA polymerase II [Lycopersicon escu... 181 1e-43
gi|3746590|gb|AAC64010.1| RNA polymerase II subunit 2 [Kopsia fr... 180 2e-43
gi|4867860|emb|CAB43081.1| RNA polymerase II [Potalia resinifera] 179 4e-43
gi|40644582|emb|CAD89877.1| RNA polymerase II, second largest su... 177 2e-42
gi|40643897|emb|CAD89687.1| RNA polymerase II, second largest su... 176 3e-42
gi|40642976|emb|CAD90163.1| DNA-directed RNA polymerase II large... 176 4e-42
gi|40642970|emb|CAD88979.1| DNA-directed RNA polymerase subunit ... 176 4e-42
gi|3746600|gb|AAC64015.1| RNA polymerase II subunit 2 [Mostuea b... 175 8e-42
gi|40643911|emb|CAD89878.1| RNA polymerase II, second largest su... 174 1e-41
gi|40643907|emb|CAD89692.1| RNA polymerase II, second largest su... 174 2e-41
gi|4867864|emb|CAB43075.1| RNA polymerase II [Mitrasacme pilosa] 173 2e-41
gi|4867868|emb|CAB43076.1| RNA polymerase II [Neuburgia corynoca... 172 6e-41
gi|40644557|emb|CAD89597.1| RNA polymerase II, second largest su... 169 5e-40
gi|1742933|emb|CAA64391.1| DNA-directed RNA polymerase I [Agaric... 160 2e-37
gi|40644543|emb|CAD88886.1| DNA-directed RNA polymerase subunit ... 159 4e-37
gi|45120566|gb|AAO64652.2| RNA polymerase II subunit RPB2 [Chond... 158 1e-36
gi|40644049|emb|CAD98812.1| RNA polymerase II, second largest su... 158 1e-36
gi|15128155|gb|AAK84400.1| LCDV orf3-like protein [Regina ranavi... 157 1e-36
gi|18767710|ref|NP_572001.1| DNA-directed RNA polymerase II seco... 153 3e-35
gi|49237360|ref|YP_031641.1| DNA-dependent RNA polymerase II sec... 152 7e-35
gi|9634859|ref|NP_039152.1| ORF FPV189 RNA polymerase subunit, R... 142 7e-32
gi|40556201|ref|NP_955286.1| CNPV263 RNA polymerase subunit RPO1... 142 7e-32
gi|41023473|emb|CAE52727.1| A24R RPO132 orthologue [Fowlpox viru... 142 7e-32
gi|40644041|emb|CAD92463.1| RNA polymerase II [Evolvulus sp. Ste... 140 2e-31
gi|18640199|ref|NP_570273.1| SPV113 RNA polymerase subunit RPO13... 139 5e-31
gi|45120576|gb|AAO64673.2| RNA polymerase II subunit RPB2 [Polyp... 138 8e-31
gi|45358924|ref|NP_988481.1| DNA-directed RNA polymerase subunit... 138 8e-31
gi|17975048|ref|NP_536562.1| A25R [Monkeypox virus] >gnl|BL_ORD_... 138 1e-30
gi|9629061|ref|NP_044080.1| MC129R [Molluscum contagiosum virus]... 137 1e-30
gi|38229278|ref|NP_938371.1| 116R [Yaba monkey tumor virus] >gnl... 137 1e-30
gi|50058765|gb|AAT69135.1| RNA polymerase II [Schizanthus pinnatus] 137 1e-30
gi|9633750|ref|NP_051828.1| m114R [Myxoma virus] >gnl|BL_ORD_ID|... 136 3e-30
gi|15150555|ref|NP_150550.1| LSDV116 RNA polymerase subunit [lum... 136 4e-30
gi|21492568|ref|NP_659688.1| RNA polymerase subunit RPO132 [Shee... 136 4e-30
gi|22595809|gb|AAN02841.1| RNA polymerase subunit [lumpy skin di... 136 4e-30
gi|12085099|ref|NP_073501.1| 116R protein [Yaba-like disease vir... 136 4e-30
gi|9627649|ref|NP_042172.1| A24R [Variola virus] >gnl|BL_ORD_ID|... 135 7e-30
gi|7434760|pir||T28566 DNA-directed RNA polymerase (EC 2.7.7.6) ... 135 7e-30
gi|6969808|gb|AAF34020.1| TA25R [Vaccinia virus (strain Tian Tan)] 135 7e-30
gi|22164733|ref|NP_671646.1| EVM127 [Ectromelia virus] >gnl|BL_O... 135 9e-30
gi|9633924|ref|NP_052003.1| gp114R [Rabbit fibroma virus] >gnl|B... 134 1e-29
gi|50365415|ref|YP_053840.1| DNA-directed RNA polymerase beta su... 134 1e-29
gi|7514172|pir||F72166 A25R protein - variola minor virus (strai... 134 1e-29
gi|30519517|emb|CAD90692.1| A25R protein [Cowpox virus] 134 1e-29
gi|29427645|sp||P59470_1 [Segment 1 of 2] DNA-directed RNA polym... 134 1e-29
gi|11261319|pir||T37411 RNA polymerase subunit rpo132 - vaccinia... 134 2e-29
gi|46402034|ref|YP_006777.1| RPXV133 [Rabbitpox virus] >gnl|BL_O... 134 2e-29
gi|323395|gb|AAA42920.1| rpo132 RNA polymerase (early and late) 133 3e-29
gi|20178520|ref|NP_619941.1| Rpo132 or CPXV157 protein [Cowpox ... 133 3e-29
gi|133381|sp|P16716|RPO2_CAPVK DNA-DIRECTED RNA POLYMERASE 132 K... 133 3e-29
gi|9791084|ref|NP_063811.1| DNA-directed RNA polymerase subunit ... 132 4e-29
gi|18640376|ref|NP_570532.1| RNA polymerase subunit RPO132; CMLV... 132 6e-29
gi|1173133|sp|P41558|RPB2_METVA DNA-directed RNA polymerase subu... 129 4e-28
gi|15679062|ref|NP_276179.1| DNA-dependent RNA polymerase, subun... 129 4e-28
gi|45508491|ref|ZP_00160829.1| COG0085: DNA-directed RNA polymer... 128 8e-28
gi|14587117|gb|AAK70487.1| RNA polymerase II subunit 2 [Blephari... 127 1e-27
gi|40643891|emb|CAD89360.1| RNA polymerase II, second largest su... 127 1e-27
gi|15669229|ref|NP_248034.1| DNA-directed RNA polymerase, subuni... 127 2e-27
gi|28212181|ref|NP_783125.1| DNA-directed RNA polymerase beta ch... 126 3e-27
gi|47459116|ref|YP_015978.1| DNA-directed RNA polymerase beta ch... 126 3e-27
gi|48840819|ref|ZP_00297745.1| COG0085: DNA-directed RNA polymer... 126 4e-27
gi|29427646|sp||P59470_2 [Segment 2 of 2] DNA-directed RNA polym... 126 4e-27
gi|40644651|emb|CAD90165.1| DNA-directed RNA polymerase II large... 125 5e-27
gi|133463|sp|P09844|RPB2_METTW DNA-directed RNA polymerase subun... 125 7e-27
gi|15594734|ref|NP_212523.1| DNA-directed RNA polymerase (rpoB) ... 125 7e-27
gi|48871264|ref|ZP_00323980.1| COG0085: DNA-directed RNA polymer... 124 2e-26
gi|22970293|ref|ZP_00017399.1| hypothetical protein [Chloroflexu... 123 3e-26
gi|24380333|ref|NP_722288.1| DNA-dependent RNA polymerase, beta ... 123 3e-26
gi|19114013|ref|NP_593101.1| dna-directed rna polymerase ii 138 ... 123 3e-26
gi|19705327|ref|NP_602822.1| DNA-directed RNA polymerase beta ch... 122 4e-26
gi|46119799|ref|ZP_00177408.2| COG0085: DNA-directed RNA polymer... 122 8e-26
gi|40643893|emb|CAD89519.1| RNA polymerase II second largest sub... 122 8e-26
gi|20808668|ref|NP_623839.1| DNA-directed RNA polymerase beta su... 121 1e-25
gi|17229086|ref|NP_485634.1| RNA polymerase beta subunit [Nostoc... 121 1e-25
gi|34762883|ref|ZP_00143866.1| DNA-directed RNA polymerase beta ... 121 1e-25
gi|23129279|ref|ZP_00111111.1| COG0085: DNA-directed RNA polymer... 120 2e-25
gi|23024871|ref|ZP_00064062.1| COG0085: DNA-directed RNA polymer... 120 2e-25
gi|48857352|ref|ZP_00311365.1| COG0085: DNA-directed RNA polymer... 120 2e-25
gi|21228375|ref|NP_634297.1| DNA-directed RNA polymerase beta ch... 120 3e-25
gi|42527922|ref|NP_973020.1| DNA-directed RNA polymerase, beta s... 120 3e-25
gi|18311395|ref|NP_563329.1| RNA polymerase beta subunit [Clostr... 120 3e-25
gi|48865210|ref|ZP_00319073.1| COG0085: DNA-directed RNA polymer... 119 4e-25
gi|32473688|ref|NP_866682.1| DNA-directed RNA polymerase beta ch... 119 5e-25
gi|41017927|sp|Q7URW6|RPOB_RHOBA DNA-directed RNA polymerase bet... 119 5e-25
gi|40644045|emb|CAD92661.1| RNA polymerase II [Lonicera sp. Oxel... 119 5e-25
gi|1369760|gb|AAC37118.1| RNA polymerase beta subunit [Borrelia ... 119 5e-25
gi|8132026|gb|AAF73184.1| RNA polymerase beta subunit [Leptospir... 119 5e-25
gi|17225232|gb|AAL37309.1| RNA polymerase B-subunit [Staphylococ... 119 6e-25
gi|1350848|sp|P47767|RPOB_SPICI DNA-directed RNA polymerase beta... 119 6e-25
gi|22536344|ref|NP_687195.1| DNA-directed RNA polymerase, beta s... 119 6e-25
gi|27467224|ref|NP_763861.1| RNA polymerase beta chain [Staphylo... 119 6e-25
gi|11467044|ref|NP_041951.1| RNA polymerase beta chain [Euglena ... 118 8e-25
gi|46446238|ref|YP_007603.1| probable DNA-directed RNA polymeras... 118 8e-25
gi|22298184|ref|NP_681431.1| RNA polymerase beta subunit [Thermo... 118 8e-25
gi|28377825|ref|NP_784717.1| DNA-directed RNA polymerase, beta s... 118 8e-25
gi|15791390|ref|NP_281214.1| DNA-directed RNA polymerase subunit... 118 1e-24
gi|21672996|ref|NP_661061.1| DNA-directed RNA polymerase, beta s... 118 1e-24
gi|15903819|ref|NP_359369.1| DNA-dependent RNA polymerase subuni... 117 1e-24
gi|17225230|gb|AAL37308.1| RNA polymerase B-subunit [Staphylococ... 117 1e-24
gi|1350849|sp|P47768|RPOB_STAAU DNA-directed RNA polymerase beta... 117 1e-24
gi|17225226|gb|AAL37306.1| RNA polymerase B-subunit [Staphylococ... 117 1e-24
gi|40641906|emb|CAD92660.1| RNA polymerase II [Anthriscus sylves... 117 1e-24
gi|15926220|ref|NP_373753.1| RNA polymerase beta chain [Staphylo... 117 1e-24
gi|49482772|ref|YP_039996.1| DNA-directed RNA polymerase beta ch... 117 1e-24
gi|15923532|ref|NP_371066.1| RNA polymerase beta chain [Staphylo... 117 1e-24
gi|15901784|ref|NP_346388.1| DNA-directed RNA polymerase, beta s... 117 1e-24
gi|17225228|gb|AAL37307.1| RNA polymerase B-subunit [Staphylococ... 117 1e-24
gi|19745277|ref|NP_606413.1| putative DNA-dependent RNA polymera... 117 2e-24
gi|15674321|ref|NP_268495.1| putative DNA-dependent RNA polymera... 117 2e-24
gi|21909611|ref|NP_663879.1| putative DNA-dependent RNA polymera... 117 2e-24
gi|49235617|ref|ZP_00329684.1| COG0085: DNA-directed RNA polymer... 117 2e-24
gi|42561522|ref|NP_975973.1| DNA-directed RNA polymerase beta ch... 117 2e-24
gi|15639233|ref|NP_218681.1| DNA-directed RNA polymerase, beta s... 116 3e-24
gi|5726633|gb|AAD48492.1| RNA polymerase beta subunit [Bacillus ... 116 3e-24
gi|39938746|ref|NP_950512.1| DNA-directed RNA polymerase beta su... 116 3e-24
gi|40644649|emb|CAD90164.1| DNA-directed RNA polymerase II large... 116 4e-24
gi|50591319|ref|ZP_00332635.1| COG0085: DNA-directed RNA polymer... 116 4e-24
gi|16329957|ref|NP_440685.1| RNA polymerase beta subunit [Synech... 116 4e-24
gi|15612689|ref|NP_240992.1| DNA-directed RNA polymerase beta su... 115 5e-24
gi|37521852|ref|NP_925229.1| RNA polymerase beta subunit [Gloeob... 115 7e-24
gi|23097567|ref|NP_691033.1| DNA-directed RNA polymerase beta su... 115 9e-24
gi|32745095|gb|AAP87113.1| Hypothetical RPB2 protein [Trypanosom... 115 9e-24
gi|11467690|ref|NP_050742.1| RNA polymerase beta chain [Guillard... 115 9e-24
gi|46113103|ref|ZP_00182318.2| COG0085: DNA-directed RNA polymer... 115 9e-24
gi|15673782|ref|NP_267957.1| DNA-directed RNA polymerase beta ch... 115 9e-24
gi|23112360|ref|ZP_00097852.1| COG0085: DNA-directed RNA polymer... 114 1e-23
gi|48855328|ref|ZP_00309487.1| COG0085: DNA-directed RNA polymer... 114 2e-23
gi|42518422|ref|NP_964352.1| DNA-directed RNA polymerase beta ch... 114 2e-23
gi|46277293|gb|AAS86837.1| RNA polymerase II second largest subu... 114 2e-23
gi|23003766|ref|ZP_00047415.1| COG0085: DNA-directed RNA polymer... 114 2e-23
gi|15896392|ref|NP_349741.1| DNA-dependent RNA polymerase beta s... 114 2e-23
gi|41179041|ref|NP_958397.1| RNA polymerase beta subunit II [Chl... 114 2e-23
gi|29840449|ref|NP_829555.1| DNA-directed RNA polymerase, beta s... 114 2e-23
gi|11466382|ref|NP_038385.1| RNA polymerase beta chain [Mesostig... 114 2e-23
gi|36333353|gb|AAP75734.1| RNA polymerase beta subunit [Afipia s... 113 3e-23
gi|36333355|gb|AAP75735.1| RNA polymerase beta subunit [Afipia g... 113 3e-23
gi|15829017|ref|NP_326377.1| DNA-DIRECTED RNA POLYMERASE BETA CH... 113 3e-23
gi|41017743|sp|Q8GCR3|RPB4_ENTFC DNA-directed RNA polymerase bet... 113 3e-23
gi|16077175|ref|NP_387988.1| RNA polymerase (beta subunit) [Baci... 113 3e-23
gi|16753076|ref|NP_445236.1| DNA-directed RNA polymerase, beta s... 113 4e-23
gi|45547055|ref|ZP_00187116.1| COG0085: DNA-directed RNA polymer... 113 4e-23
gi|29377682|ref|NP_816836.1| DNA-directed RNA polymerase, beta s... 113 4e-23
gi|15835616|ref|NP_300140.1| RNA polymerase beta [Chlamydophila ... 113 4e-23
gi|15618005|ref|NP_224289.1| RNA Polymerase Beta [Chlamydophila ... 113 4e-23
gi|45513023|ref|ZP_00164589.1| COG0085: DNA-directed RNA polymer... 113 4e-23
gi|15605036|ref|NP_219820.1| RNA Polymerase Beta [Chlamydia trac... 112 5e-23
gi|15835206|ref|NP_296965.1| DNA-directed RNA polymerase, beta s... 112 5e-23
gi|16799362|ref|NP_469630.1| RNA polymerase (beta subunit) [List... 112 5e-23
gi|29348143|ref|NP_811646.1| DNA-directed RNA polymerase beta ch... 112 5e-23
gi|47091392|ref|ZP_00229189.1| DNA-directed RNA polymerase, beta... 112 6e-23
gi|16802304|ref|NP_463789.1| RNA polymerase (beta subunit) [List... 112 6e-23
gi|41017794|sp|Q9F3X8|RPOB_PORCN DNA-directed RNA polymerase bet... 112 6e-23
gi|48893187|ref|ZP_00326456.1| COG0085: DNA-directed RNA polymer... 112 6e-23
gi|34540221|ref|NP_904700.1| DNA-directed RNA polymerase, beta s... 112 8e-23
gi|24216119|ref|NP_713600.1| RNA polymerase beta subunit [Leptos... 112 8e-23
gi|45656647|ref|YP_000733.1| RNA polymerase beta subunit [Leptos... 112 8e-23
gi|41017746|sp|Q8GCR6|RPB1_ENTFC DNA-directed RNA polymerase bet... 112 8e-23
gi|11467566|ref|NP_043712.1| RNA polymerase beta chain [Odontell... 112 8e-23
gi|48825088|ref|ZP_00286382.1| COG0085: DNA-directed RNA polymer... 112 8e-23
gi|22748410|gb|AAN05375.1| putative RNA polymerase [Oryza sativa... 112 8e-23
gi|41017744|sp|Q8GCR4|RPB2_ENTFC DNA-directed RNA polymerase bet... 111 1e-22
gi|41017745|sp|Q8GCR5|RPB3_ENTFC DNA-directed RNA polymerase bet... 111 1e-22
gi|45120582|gb|AAO64686.2| RNA polymerase II subunit RPB2 [Coltr... 111 1e-22
gi|40643895|emb|CAD89520.1| RNA polymerase II second largest sub... 110 2e-22
gi|42779183|ref|NP_976430.1| DNA-directed RNA polymerase, beta s... 110 2e-22
gi|21398064|ref|NP_654049.1| RNA_pol_B, RNA polymerase beta subu... 110 2e-22
gi|47570395|ref|ZP_00241035.1| DNA-directed RNA polymerase, beta... 110 2e-22
gi|30018372|ref|NP_830003.1| DNA-directed RNA polymerase beta ch... 110 2e-22
gi|10637859|emb|CAC10556.1| DNA-dependent RNA polymerase subunit... 110 3e-22
gi|42795545|gb|AAS46111.1| RNA polymerase beta chain; rpoB [Oryz... 110 3e-22
gi|45120527|gb|AAS55049.1| RNA polymerase II second largest subu... 110 3e-22
gi|50058733|gb|AAT69119.1| RNA polymerase II [Porana velutina] 110 3e-22
>gi|17506623|ref|NP_492476.1| RNA polymerase (1J858) [Caenorhabditis
elegans]
gi|7499056|pir||T20870 hypothetical protein F14B4.3 - Caenorhabditis
elegans
gi|3875865|emb|CAA99827.1| Hypothetical protein F14B4.3
[Caenorhabditis elegans]
Length = 1127
Score = 2251 bits (5832), Expect = 0.0
Identities = 1120/1127 (99%), Positives = 1120/1127 (99%)
Frame = -1
Query: 3384 MDCDIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAK 3205
MDCDIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAK
Sbjct: 1 MDCDIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAK 60
Query: 3204 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRG 3025
LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRG
Sbjct: 61 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRG 120
Query: 3024 MSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV 2845
MSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV
Sbjct: 121 MSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV 180
Query: 2844 MMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKR 2665
MMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKR
Sbjct: 181 MMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKR 240
Query: 2664 GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 2485
GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII
Sbjct: 241 GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 300
Query: 2484 RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 2305
RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER
Sbjct: 301 RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 2304 MENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLA 2125
MENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLA
Sbjct: 361 MENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLA 420
Query: 2124 LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 1945
LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA
Sbjct: 421 LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 480
Query: 1944 PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY 1765
PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY
Sbjct: 481 PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY 540
Query: 1764 VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR 1585
VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR
Sbjct: 541 VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR 600
Query: 1584 PVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 1405
PVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ
Sbjct: 601 PVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660
Query: 1404 SPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA 1225
SPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA 720
Query: 1224 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKT 1045
CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKT
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKT 780
Query: 1044 VGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKH 865
VGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKH
Sbjct: 781 VGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKH 840
Query: 864 ALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTI 685
ALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTI
Sbjct: 841 ALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTI 900
Query: 684 GMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGR 505
GMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGR
Sbjct: 901 GMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGR 960
Query: 504 QMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAII 325
QMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPV GIRFGEMERDAII
Sbjct: 961 QMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAII 1020
Query: 324 AHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQ 145
AHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQ
Sbjct: 1021 AHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQ 1080
Query: 144 RCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSKVTGS 4
RCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSKVTGS
Sbjct: 1081 RCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSKVTGS 1127
>gi|39581303|emb|CAE72324.1| Hypothetical protein CBG19469
[Caenorhabditis briggsae]
Length = 1131
Score = 2076 bits (5378), Expect = 0.0
Identities = 1022/1131 (90%), Positives = 1076/1131 (94%), Gaps = 4/1131 (0%)
Frame = -1
Query: 3384 MDCDIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAK 3205
MDCDIASYHV SFDFLV+ GCQ AAQA+PAEKFRLKNGD VTMKFTSAQLHKPTLD+GAK
Sbjct: 1 MDCDIASYHVSSFDFLVTDGCQLAAQAIPAEKFRLKNGDNVTMKFTSAQLHKPTLDSGAK 60
Query: 3204 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRG 3025
LTSDTLPL PAECRQRG+TYAGNLKV IDVHVN +RLDIIE ILGKVPIMLRSEGCHLRG
Sbjct: 61 LTSDTLPLYPAECRQRGMTYAGNLKVNIDVHVNETRLDIIETILGKVPIMLRSEGCHLRG 120
Query: 3024 MSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV 2845
MSRK+LV AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV
Sbjct: 121 MSRKQLVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGV 180
Query: 2844 MMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKR 2665
MMRSVKENHTAVMMT+HYLDTGTMQLALQFRREIFY+P+MYIVKALT+KNDAVISA FK+
Sbjct: 181 MMRSVKENHTAVMMTMHYLDTGTMQLALQFRREIFYIPMMYIVKALTNKNDAVISAEFKK 240
Query: 2664 GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 2485
GR +DQF++SCILNMLAQCQEE IL+QE+AI AIGSRFRVAVSDRV PWE D++AGRFI+
Sbjct: 241 GRPKDQFFASCILNMLAQCQEEGILDQESAITAIGSRFRVAVSDRVGPWEKDIDAGRFIL 300
Query: 2484 RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 2305
+ECVLIHL+ DEEKF+TLAYM QKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER
Sbjct: 301 KECVLIHLEDDEEKFYTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 2304 MENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLA 2125
MENI+GMVRRK+E+MS+R+DF LTSA ILKALGNH GGEITRGMAYFLATGNLVTRVGLA
Sbjct: 361 MENILGMVRRKIEFMSARQDFRLTSAQILKALGNHNGGEITRGMAYFLATGNLVTRVGLA 420
Query: 2124 LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 1945
LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA
Sbjct: 421 LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 480
Query: 1944 PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY 1765
PCGLLNHVTASC IVT L+DNSNV S+LAELGMYT KTV++AP GEELYPVLM+G+F+GY
Sbjct: 481 PCGLLNHVTASCEIVTHLTDNSNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGKFIGY 540
Query: 1764 VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR 1585
VPI KAASIERYLRCAKVAKDARIPYT+EIALVRRSTDIKNIQTQYPGIYILSD GRLIR
Sbjct: 541 VPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIR 600
Query: 1584 PVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 1405
PVRNLA+D+VEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ
Sbjct: 601 PVRNLALDSVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660
Query: 1404 SPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA 1225
SPRNVYQCQMGKQTMGTAVHAWH+RADNKMYRLQFPQQPMLKLEAYEKY+MDEYPLGTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHAWHTRADNKMYRLQFPQQPMLKLEAYEKYQMDEYPLGTNA 720
Query: 1224 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKT 1045
CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERI LVTERE+KTIF++NPREEIKT
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERIELVTEREKKTIFHKNPREEIKT 780
Query: 1044 VGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEG-DSGAK 868
VGPDGLPIPGRRYF+DEVYYVTFNMETGDFRTHKFHYAEPAYCG+VRIVE E GA+
Sbjct: 781 VGPDGLPIPGRRYFMDEVYYVTFNMETGDFRTHKFHYAEPAYCGMVRIVENSEAPGGGAQ 840
Query: 867 HALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMT 688
HALIQWRIERNPIIGDKFASRHGQKGINSFLWP ESLPFSETGMVPDIIFNPHGFPSRMT
Sbjct: 841 HALIQWRIERNPIIGDKFASRHGQKGINSFLWPTESLPFSETGMVPDIIFNPHGFPSRMT 900
Query: 687 IGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDG 508
IGMMIESMAGK AATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDG
Sbjct: 901 IGMMIESMAGKCAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDG 960
Query: 507 RQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAI 328
RQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPV GIRFGEMERDAI
Sbjct: 961 RQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAI 1020
Query: 327 IAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKK---RKDDEPLDY 157
IAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMS++ S K++ +D LDY
Sbjct: 1021 IAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSNKKQSFANKRRFHEENEDAQLDY 1080
Query: 156 TETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSKVTGS 4
TETQRCRTCD+DDQVFLLQVPRVFR+LTAELAAMNVKIKLGIEHP+K+TGS
Sbjct: 1081 TETQRCRTCDRDDQVFLLQVPRVFRFLTAELAAMNVKIKLGIEHPAKITGS 1131
>gi|38614338|gb|AAH60656.1| RNA polymerase I polypeptide B [Mus
musculus]
Length = 1135
Score = 986 bits (2548), Expect = 0.0
Identities = 513/1120 (45%), Positives = 716/1120 (63%), Gaps = 5/1120 (0%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
D+ HVDSF++ +G A QA+P +F K+ + +++ A + P++ G
Sbjct: 37 DLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKD-ERISLTIVDAVISPPSVPKGT--IC 93
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
L + PAECR R TY G L I VNG II+ LG VPIM++S+ C+L +
Sbjct: 94 KDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
+ L+ EE E GGYFI+NG EKVIR+LI RRNFPIA++R +K +G +++FGV MR
Sbjct: 154 RVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMR 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V+E H+AV M LHY++ GT+ L +R+E+F++PL + +KAL +D I +G+
Sbjct: 214 CVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
+D F+ + + ML EE +Q+ + +G FRV +S + W ++EA F++ +C
Sbjct: 274 EDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLS--LPDWYPNVEAAEFLLNQC 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL S+ +KF+ L MT+KL AL +GEC + PD+ QE G + L+ L+E+MEN
Sbjct: 332 ICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVFSPGQLFLMFLKEKMEN 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ ++ L+ + + + + + ++K G E+TR Y LATGNL ++ GL Q
Sbjct: 392 WLVSIKIVLDKRAQKANVSINNENLMKIFS--MGTELTRPFEYLLATGNLRSKTGLGFLQ 449
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
+SG V+A+++N LR++SHFR +HRGA F +MRTT VR+L PE+WGF+CPVHTPDGAPCG
Sbjct: 450 DSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCG 509
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
LLNH+TA C +VT +++P+LL LG+ T A P + YPVL++G +G+V
Sbjct: 510 LLNHLTAVCEVVTKFVYTASIPALLCGLGV-TPVDTAPCRPYSDCYPVLLDGVMVGWVDK 568
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A + LR KV ++ RIP E+AL+ + + YPG+++ + RL+RPV+
Sbjct: 569 DLAPEVADTLRRFKVLREKRIPPWMEVALI----PMTGKPSLYPGLFLFTTPCRLVRPVQ 624
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPR 1396
NL + E IGT EQ++++V + +E G++ HQEL P L S N IPF DHNQSPR
Sbjct: 625 NLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPR 684
Query: 1395 NVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVA 1216
N+YQCQMGKQTMG + + +R+DNK+YRLQ PQ P+++ Y+ Y+MD YP+GTNA VA
Sbjct: 685 NMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 1215 VISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTERERKTIFYRNPREE--I 1051
VISYTGYDMEDAM +NKAS++RGFAHG+V K E I+L + E +F P + +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVM 804
Query: 1050 KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGA 871
+ + DGLP G + + YY N+ TG+ + E +++ G
Sbjct: 805 QKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF 864
Query: 870 KHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRM 691
K I RI RNP IGDKFASRHGQKGI S LWP E +PF+E+GM+PDI+FNPHGFPSRM
Sbjct: 865 KCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRM 924
Query: 690 TIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVD 511
TIGM+IESMAGK+AA HG +DA+PF+F+E+N+A+ +FGE+L AGYN+YG E YSG+
Sbjct: 925 TIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGIS 984
Query: 510 GRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDA 331
G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QP+ GIRFGEMERDA
Sbjct: 985 GMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDA 1044
Query: 330 IIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTE 151
++AHGTSF+L DRL NCSDR VA+ C CGSLLS L+ S + RK
Sbjct: 1045 LLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRK--------- 1095
Query: 150 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
C C + D + + VP VFRY AELAAMN+K+KL +
Sbjct: 1096 -YNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|6677789|ref|NP_033112.1| RNA polymerase I polypeptide B; RNA
polymerase 1-2, 128 kDa subunit; DNA-directed RNA
polymerase I 135kDa polypeptide; RNA polymerase I subunit
2 [Mus musculus]
gi|2500625|sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I 135 kDa
polypeptide (RNA polymerase I subunit 2) (RPA135)
gi|11261308|pir||T42723 probable DNA-directed RNA polymerase (EC
2.7.7.6) I second largest chain - mouse
gi|1621594|gb|AAC52850.1| second largest subunit of RNA polymerase I
Length = 1135
Score = 981 bits (2536), Expect = 0.0
Identities = 510/1120 (45%), Positives = 715/1120 (63%), Gaps = 5/1120 (0%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
D+ HVDSF++ +G A QA+P +F K+ + +++ A + P++ G
Sbjct: 37 DLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKD-ERISLTIVDAVISPPSVPKGT--IC 93
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
L + PAECR R TY G L I VNG II+ LG VPIM++S+ C+L +
Sbjct: 94 KDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
+ L+ EE E GGYFI+NG EKVIR+LI RRNFP+A++R +K +G +++FGV MR
Sbjct: 154 RVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRNFPVAMVRPKWKSRGLGYTQFGVSMR 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V+E H+AV M LHY++ GT+ L +R+E+F++PL + +KAL +D I +G+
Sbjct: 214 CVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
+D F+ + + ML EE +Q+ + +G FRV +S + W ++EA F++ +
Sbjct: 274 EDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLS--LPDWYPNVEAAEFLLNQG 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL S+ +KF+ MT+KL AL +GEC + PD+ QE G + L+ L+E+MEN
Sbjct: 332 ICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMEN 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ ++ L+ + + + + + ++K G E+TR Y LATGNL ++ GL +
Sbjct: 392 WLVSIKIVLDKRAQKANVSINNENLMKIFS--MGTELTRPFEYLLATGNLRSKTGLGFLE 449
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
+SG V+A+++N LR++SHFR +HRGA F +MRTT VR+L PE+WGF+CPVHTPDGAPCG
Sbjct: 450 DSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCG 509
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
LLNH+TA C +VT D +++P+LL LG+ T A P + YPVL++G +G+V
Sbjct: 510 LLNHLTAVCEVVTKFGDTASIPALLCGLGV-TGADTAPCRPYSDCYPVLLDGVMVGWVDK 568
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A + LR KV ++ RIP E+AL+ + + YPG+++ + RL+RPV+
Sbjct: 569 DLAPEVADTLRRFKVLREKRIPPWMEVALI----PMTGKPSLYPGLFLFTTPCRLVRPVQ 624
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPR 1396
NL + E IGT EQ++++V + +E G++ HQEL P L S N IPF DHNQSPR
Sbjct: 625 NLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPR 684
Query: 1395 NVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVA 1216
N+YQCQMGKQTMG + + +R+DNK+YRLQ PQ P+++ Y+ Y+MD YP+GTNA VA
Sbjct: 685 NMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVA 744
Query: 1215 VISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTERERKTIFYRNPREE--I 1051
VISYTGYDMEDAM +NKAS++RGFAHG+V K E I+L + E +F P + +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVM 804
Query: 1050 KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGA 871
+ + DGLP G + + YY N+ TG+ + E +++ G
Sbjct: 805 QKLDDDGLPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF 864
Query: 870 KHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRM 691
K I RI RNP IGDKFASRHGQKGI S LWP E +PF+E+GM+PDI+FNPHGFPSRM
Sbjct: 865 KCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRM 924
Query: 690 TIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVD 511
TIGM+IESMAGK+AA HG +DA+PF+F+E+N+A+ +FGE+L AGYN+YG E YSG+
Sbjct: 925 TIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGIS 984
Query: 510 GRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDA 331
G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QP+ GIRFGEMERDA
Sbjct: 985 GMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDA 1044
Query: 330 IIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTE 151
++AHGTSF+L DRL NCSDR VA+ C CGSLLS L+ S + RK
Sbjct: 1045 LLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRK--------- 1095
Query: 150 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
C C + D + + VP VFRY AELAAMN+K+KL +
Sbjct: 1096 -YNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|33469941|ref|NP_061887.2| RNA polymerase I polypeptide B;
DNA-directed RNA polymerase I 135kDa polypeptide; RNA
polymerase I subunit 2 [Homo sapiens]
Length = 1135
Score = 976 bits (2522), Expect = 0.0
Identities = 507/1120 (45%), Positives = 707/1120 (62%), Gaps = 5/1120 (0%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
++ HV+SF++ V +G A QA+P +F K+ + ++ A + PT+ G
Sbjct: 37 ELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKD-ERISFTILDAVISPPTVPKGTICKE 95
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
+ PAECR R TY G L I+ VNG II+ LG VPIM++S+ C+LR +
Sbjct: 96 ANV--YPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
+ L+ EE E GGYFI+NG EKVIR+LI RRNFPIA+IR +K +G ++++GV M
Sbjct: 154 QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMH 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V+E H+AV M LHYL+ GT+ L +R+E+F++PL + +KAL +D I +G+
Sbjct: 214 CVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
D F + + ML EE Q+ + +G FRV ++ V W + +A F+ +C
Sbjct: 274 DDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLN--VPDWYPNEQAAEFLFNQC 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL S+ EKF+ L MT+KL AL KGEC + PD+ QE G + L+ L+E++E
Sbjct: 332 ICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEG 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ ++ + + + + + +++ G ++T+ Y ATGNL ++ GL L Q
Sbjct: 392 WLVSIKIAFDKKAQKTSVSMNTDNLMRIFT--MGIDLTKPFEYLFATGNLRSKTGLGLLQ 449
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
+SG V+A+++N +R++SHFR +HRGA F +MRTT VR+L PE+WGF+CPVHTPDG PCG
Sbjct: 450 DSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCG 509
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
L+NH+TA C +VT +++P+LL LG+ T A E YPVL++G +G+V
Sbjct: 510 LMNHLTAVCEVVTQFVYTASIPALLCNLGV-TPIDGAPHRSYSECYPVLLDGVMVGWVDK 568
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A I LR KV ++ RIP E+ L+ + + YPG+++ + RL+RPV+
Sbjct: 569 DLAPGIADSLRHFKVLREKRIPPWMEVVLI----PMTGKPSLYPGLFLFTTPCRLVRPVQ 624
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPR 1396
NLA+ E IGT EQ++++V + +E GVT HQEL P L S N IPF DHNQSPR
Sbjct: 625 NLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPR 684
Query: 1395 NVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVA 1216
N+YQCQMGKQTMG + + R+DNK+YRLQ PQ P+++ Y+ Y+MD YP+GTNA VA
Sbjct: 685 NMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 1215 VISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTERERKTIFYRNPREE--I 1051
VISYTGYDMEDAM +NKAS++RGFAHG+V K E I+L + + + +F P + +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVL 804
Query: 1050 KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGA 871
+ + DGLP G + + YY N+ TG+ + E +++ G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF 864
Query: 870 KHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRM 691
K I R+ RNP IGDKFASRHGQKGI S LWP E +PF+E+GMVPDI+FNPHGFPSRM
Sbjct: 865 KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRM 924
Query: 690 TIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVD 511
TIGM+IESMAGK+AA HG +DA+PF+F+E+N+A+ +FGE+L AGYN+YG E YSG+
Sbjct: 925 TIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGIS 984
Query: 510 GRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDA 331
G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QP+ GIRFGEMERDA
Sbjct: 985 GLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDA 1044
Query: 330 IIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTE 151
++AHGTSF+L DRL NCSDR VA+ C +CGSLLS L+ S + RK
Sbjct: 1045 LLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRK--------- 1095
Query: 150 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
C C + D + + VP VFRY AELAAMN+K+KL +
Sbjct: 1096 -YNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|34535223|dbj|BAC87247.1| unnamed protein product [Homo sapiens]
Length = 1135
Score = 971 bits (2511), Expect = 0.0
Identities = 506/1120 (45%), Positives = 705/1120 (62%), Gaps = 5/1120 (0%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
++ HV+SF++ V +G A QA+P +F K+ + ++ A + PT+ G
Sbjct: 37 ELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKD-ERISFTILDAVISPPTVPKGTICKE 95
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
+ PAECR R TY G L I+ VNG II+ LG VPIM++S+ C+LR +
Sbjct: 96 ANV--YPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
+ L+ EE E GGYFI+NG EKVIR+LI RRNFPIA+IR +K +G ++++GV M
Sbjct: 154 QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMH 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V+E H+AV M LHYL+ GT+ L +R+E+F++PL + +KAL +D I +G+
Sbjct: 214 CVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
D F + + ML EE Q+ + +G FRV ++ V W + +A F+ +C
Sbjct: 274 DDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLN--VPDWYPNEQAAEFLFNQC 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL S+ EKF+ L MT+KL AL KGEC + PD+ QE G + L+ L+E++E
Sbjct: 332 ICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEG 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ ++ + + + + + +++ G ++T+ Y ATGNL ++ GL L Q
Sbjct: 392 WLVSIKIAFDKKAQKTSVSMNTDNLMRIFT--MGIDLTKPFEYLFATGNLRSKTGLGLLQ 449
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
+SG V+A+++N +R++SHFR +HRGA F +MRTT VR+L PE+WGF+CPVHTPDG PCG
Sbjct: 450 DSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCG 509
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
L+NH+TA C +VT +++P+LL LG+ T A E YPVL++G +G+V
Sbjct: 510 LMNHLTAVCEVVTQFVYTASIPALLCNLGV-TPIDGAPHRSYSECYPVLLDGVMVGWVDK 568
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A I LR KV ++ RIP E+ L+ + + YPG+++ + RL+RPV+
Sbjct: 569 DLAPGIADSLRHFKVLREKRIPPWMEVVLI----PMTGKPSLYPGLFLFTTPCRLVRPVQ 624
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPR 1396
NLA+ E IGT EQ++++V + +E GVT HQEL P L S N IPF DHNQSPR
Sbjct: 625 NLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPR 684
Query: 1395 NVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVA 1216
N+YQCQMGKQTMG + + R+DNK+YRLQ PQ P+++ Y+ Y+MD YP+GTNA VA
Sbjct: 685 NMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 744
Query: 1215 VISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTERERKTIFYRNPR--EEI 1051
VISYTGYDMEDAM +NKAS++RGFAHG+V K E I+L + + + +F P +
Sbjct: 745 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGGPRVL 804
Query: 1050 KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGA 871
+ + DGLP G + + YY N+ TG+ + E +++ G
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF 864
Query: 870 KHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRM 691
K I R+ RNP IGDKFASR GQKGI S LWP E +PF+E+GMVPDI+FNPHGFPSRM
Sbjct: 865 KCVCITMRVPRNPTIGDKFASRRGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRM 924
Query: 690 TIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVD 511
TIGM+IESMAGK+AA HG +DA+PF+F+E+N+A+ +FGE+L AGYN+YG E YSG+
Sbjct: 925 TIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGIS 984
Query: 510 GRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDA 331
G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QP+ GIRFGEMERDA
Sbjct: 985 GLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDA 1044
Query: 330 IIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTE 151
++AHGTSF+L DRL NCSDR VA+ C +CGSLLS L+ S + RK
Sbjct: 1045 LLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRK--------- 1095
Query: 150 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
C C + D + + VP VFRY AELAAMN+K+KL +
Sbjct: 1096 -YNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|37589362|gb|AAH59304.1| MGC68946 protein [Xenopus laevis]
Length = 1134
Score = 969 bits (2505), Expect = 0.0
Identities = 509/1120 (45%), Positives = 709/1120 (62%), Gaps = 5/1120 (0%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
+I H+DSF+ +++G A QA+ +F +N D V ++ A L P + G+
Sbjct: 37 EITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYRN-DKVALQIVDAVLSHPLVPKGSICKE 95
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
+ PAECR R TY G L + +NG + II+ LG+ PIM++S+ C+L ++
Sbjct: 96 QKI--YPAECRGRRSTYRGKLTADVSWSLNGMQKGIIKQTLGQFPIMVKSKFCNLYDLNP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
K+L+ EE E GGYFI+NG EKVIR+LI RRNFPIA+IR +K +G ++++G+ +R
Sbjct: 154 KQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISIR 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V++ HTAV M LHYL+ G++ + +++E+F++PL + +KAL + +D I +G+
Sbjct: 214 CVQDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVEFSDYQIFTELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
+ FY C+ ML EE NQ+ ++ +G RFRV + W D +A F+I C
Sbjct: 274 DNSFYRDCMTQMLRVVVEEGCHNQKNVLKYLGERFRVKFY--LPEWYTDEQAAEFLISHC 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL ++ EKF+ L MTQKL K C E PD+ +QE G +LL+ L+E+ME+
Sbjct: 332 ICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVLTPGQLLLMFLKEKMES 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ V+ L+ + K LT+ + K L + + ++T+ Y LATGNL ++ GL + Q
Sbjct: 392 WLLGVKLNLD-KRAHKLVDLTTETMGKILTSTS--DLTKLCEYLLATGNLRSKTGLGMLQ 448
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
SG V+A+++N +R++SHFR +HRGA F +MRTT VR+L PE+WGF+CPVHTPDG PCG
Sbjct: 449 SSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCG 508
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
L+NH+TA+C IVT S N+++P LL LGM T A + YPV+++G +G+V
Sbjct: 509 LMNHMTAACEIVTQTSYNTSLPLLLCSLGM-TPVDGAAGKSFADCYPVMLDGAMVGWVEN 567
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A + LR KV D +P +EI L+ + + YPG+++ + RL+RP+R
Sbjct: 568 NVAPGLVNALRIYKVKHDKNVPPWTEIVLI----PMTGKASLYPGLFVFTTPCRLVRPIR 623
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPR 1396
NLA+ E +GT EQV+L+V + E PG T HQEL P + S N IPF DHNQSPR
Sbjct: 624 NLALGKEELLGTLEQVFLNVAIYEGEIVPGETTHQELFPHSMLSVVANFIPFSDHNQSPR 683
Query: 1395 NVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVA 1216
N+YQCQMGKQTMG + + R+DNK+YRLQ PQ P+++ Y+ YEMD YP+GTNA VA
Sbjct: 684 NMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPVGTNAIVA 743
Query: 1215 VISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTERERKTIFYRNPREE-IK 1048
VISYTGYDMEDAM +NK+S++RGFAHG+V K + ++L + + E +F P +E +K
Sbjct: 744 VISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNIVFGIKPDDERVK 803
Query: 1047 -TVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGA 871
+ DGLP G + YY N TG+ + E ++I G
Sbjct: 804 GRLDNDGLPPVGAVLQFGDPYYGYLNFNTGESFVAYYKSKENCVVDNIKICSNDIGFGKF 863
Query: 870 KHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRM 691
K I RI RNP IGDKFASRHGQKGI S LWP E +PF+E+GMVPDI+FNPHGFPSRM
Sbjct: 864 KSVCITMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRM 923
Query: 690 TIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVD 511
TIGM+IESMAGK+AA HG +DA+PF F+E+N+A+ +FGE+L GYN+YG E YSG+
Sbjct: 924 TIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGIS 983
Query: 510 GRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDA 331
G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QPV GIRFGEMERDA
Sbjct: 984 GLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDA 1043
Query: 330 IIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTE 151
++AHGTSF+L DRL +CSDR A+ C CGSL++ + S + RK
Sbjct: 1044 LLAHGTSFLLHDRLFHCSDRSTAHMCVECGSLIAPFLEKPPPSWSSIRNRK--------- 1094
Query: 150 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
+C C++ D V + VP VFRY AELAAMN+ +KL +
Sbjct: 1095 -HQCVVCNRTDTVEAVSVPYVFRYFVAELAAMNINVKLSV 1133
>gi|48099272|ref|XP_394883.1| similar to CG4033-PA [Apis mellifera]
Length = 1114
Score = 946 bits (2444), Expect = 0.0
Identities = 486/1114 (43%), Positives = 701/1114 (62%), Gaps = 6/1114 (0%)
Frame = -1
Query: 3360 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 3181
H+DSF++++ G A + P L N D V + + +P++ +G + T +
Sbjct: 24 HIDSFNYMLEDGLCKAVKDNPHVYIHLPNKDKVALWIDDVSIDQPSVPSGI-IGIKTHKI 82
Query: 3180 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 3001
P ECRQRG +Y G + V + +N + + LG++PIM++S CHL M+ K+L++
Sbjct: 83 YPTECRQRGCSYKGKITVKLGWSINDKLQETLARDLGEIPIMIKSNRCHLNKMNPKDLIL 142
Query: 3000 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 2821
GE E GGYF++ G E++IR+L+ RRN+PIAI R +K +G FS+ G+ +RSV+++
Sbjct: 143 HGEHEQEWGGYFVIKGLERIIRMLLMTRRNYPIAIKRSGWKTRGIQFSDLGLFLRSVRDD 202
Query: 2820 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFY 2641
+T TLHY+ G+ +L ++ ++YVPL+ I+K L D +D I G D +Y
Sbjct: 203 NTTANNTLHYVTDGSAKLMFSHKKVLYYVPLILILKCLVDVSDIFIYNVLTAGCEYDLYY 262
Query: 2640 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL 2461
CILNML E+ + N E IG FR+ + + D++ FII+ C+ IHL
Sbjct: 263 KGCILNMLRAVHEQGLNNHEECKAYIGKMFRIKFFE-LPEDATDIDVCDFIIKHCIAIHL 321
Query: 2460 DSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMV 2281
++ +KF+ LA+MT+KL AL +CA E D+ QE + GH+ L +L+E++ + + +
Sbjct: 322 NNPLDKFYLLAFMTKKLFALANNKCAVEGADSVMMQECLLGGHLYLQVLKEKLYSWLTNL 381
Query: 2280 RRKL--EYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESG 2107
+ + S+ + L +L + G + M FL+TGNL + GL L Q +G
Sbjct: 382 KMSILKRARSAGNRYTLNVQEMLNIM--KYGNSLESQMENFLSTGNLRSSTGLGLMQNTG 439
Query: 2106 FSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLN 1927
+++AE IN++R++SHFRAIHRG+FF EMRTT+ R+L P+AWGFICPVHTPDGAPCGLLN
Sbjct: 440 LTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDAWGFICPVHTPDGAPCGLLN 499
Query: 1926 HVTASCRIVT--DLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPIT 1753
H+T +C I D +N+P +L +LGM +++A + Y V+++G+ +G +
Sbjct: 500 HLTMNCIITKHPDAKLKANIPIILMDLGMIP---LSIADNWKNSYIVMLDGKLIGLIDDN 556
Query: 1752 KAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRN 1573
A + LR K+ K +PY EIALV + T + QYPG+Y+ + R++RP+ N
Sbjct: 557 IIARVTDKLRLLKI-KGQEVPYMMEIALVPKKT----VPAQYPGLYLFTSPARMMRPIMN 611
Query: 1572 LAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRN 1393
LA +E+IGTFEQ+YL + + PEEA G+T HQEL + S +LIP PD+NQSPRN
Sbjct: 612 LAAKNIEYIGTFEQIYLDICVTPEEAYEGLTSHQELSKTAFLSNLASLIPMPDYNQSPRN 671
Query: 1392 VYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAV 1213
+YQCQM KQTMGT H W +++ K+YRLQ P P+ + ++K +D++ +GTNA VAV
Sbjct: 672 MYQCQMSKQTMGTPCHTWQLQSETKLYRLQTPATPLFRPVHHDKINLDDFAMGTNAIVAV 731
Query: 1212 ISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNP--REEIKTVG 1039
ISYTGYDMEDAM INKA+Y RGFAHG + K E I+L +++K+ F RNP E ++ +
Sbjct: 732 ISYTGYDMEDAMIINKAAYDRGFAHGMIYKSEFIDL---KDQKSYFARNPDKSELVEKLD 788
Query: 1038 PDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHAL 859
DGL +PG +VYY ++ + + T K+H E AY V++ + A
Sbjct: 789 IDGLHLPGTIISEGDVYYCYYDADQSTYITGKYHGKEDAYVDTVKLCGTLHNHI-PRRAC 847
Query: 858 IQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGM 679
I +RI RNP +GDKFASR GQKGI S W E LPF+ETG++PDI+FNPHGFPSRMTI M
Sbjct: 848 ITFRIPRNPSVGDKFASRAGQKGICSQKWSAEDLPFTETGLIPDIVFNPHGFPSRMTIAM 907
Query: 678 MIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQM 499
MIE MAGK+AA HG +DA+ F FNED TA+ +FG+LL + GYNYYG E YSG+DGR+M
Sbjct: 908 MIELMAGKSAAIHGLVHDATSFRFNEDETAVEYFGKLLERGGYNYYGTERMYSGIDGREM 967
Query: 498 EMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAH 319
IFFG+V+YQRLRHM++DK+QVR+TGPID +T QP+ G+RFGEMERD++I+H
Sbjct: 968 TADIFFGVVHYQRLRHMVSDKWQVRSTGPIDVLTRQPIKGRRRGGGVRFGEMERDSLISH 1027
Query: 318 GTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRC 139
G SF+LQDRL +CSD+ C++CG+LL +M + L K RC
Sbjct: 1028 GCSFLLQDRLFHCSDKTTTLVCQKCGTLLGPIMEMALNASGLGNK------------LRC 1075
Query: 138 RTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 37
R C ++ V + +P +FRYL +L + N+ +KL
Sbjct: 1076 RLCGDNESVREIDIPYIFRYLVTQLTSCNINVKL 1109
>gi|13959476|sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I 135
kDa polypeptide (RNA polymerase I subunit 2) (RPA135)
gi|10433976|dbj|BAB14082.1| unnamed protein product [Homo sapiens]
Length = 1079
Score = 935 bits (2416), Expect = 0.0
Identities = 481/1040 (46%), Positives = 668/1040 (63%), Gaps = 5/1040 (0%)
Frame = -1
Query: 3135 LKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVN 2956
++ I+ VNG II+ LG VPIM++S+ C+LR + + L+ EE E GGYFI+N
Sbjct: 58 VQADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIIN 117
Query: 2955 GSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGT 2776
G EKVIR+LI RRNFPIA+IR +K +G ++++GV M V+E H+AV M LHYL+ GT
Sbjct: 118 GIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGT 177
Query: 2775 MQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEE 2596
+ L +R+E+F+ PL + +KAL +D I +G+ D F + + ML EE
Sbjct: 178 VMLNFIYRKELFFRPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEG 237
Query: 2595 ILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQ 2416
L Q+ + +G FRV ++ V W + +A F+ +C+ IHL S+ EKF+ L MT+
Sbjct: 238 CLTQKQVLNYLGECFRVKLN--VPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTR 295
Query: 2415 KLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFIL 2236
KL AL KGEC + PD+ QE G + L+ L+E++E + ++ + + + +
Sbjct: 296 KLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSM 355
Query: 2235 TSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHF 2056
+ +++ G ++T+ Y ATGNL ++ GL L Q+SG V+A+++N +R++SHF
Sbjct: 356 NTDNLMRIFT--MGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHF 413
Query: 2055 RAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSN 1876
R +HRGA F +MRTT VR+L PE+WGF+CPVHTPDG PCGL+NH+TA C +VT ++
Sbjct: 414 RCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTAS 473
Query: 1875 VPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDAR 1696
+P+LL LG+ T A E YPVL++G +G+V A I LR KV ++ R
Sbjct: 474 IPALLCNLGV-TPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 532
Query: 1695 IPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSV 1516
IP E+ L+ + + YPG+++ + RL+RPV+NLA+ E IGT EQ++++V
Sbjct: 533 IPPWMEVVLI----PMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNV 588
Query: 1515 VLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWH 1336
+ +E GVT HQEL P L S N IPF DHNQSPRN+YQCQMGKQTMG + +
Sbjct: 589 AIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQ 648
Query: 1335 SRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASY 1156
R+DNK+YRLQ PQ P+++ Y+ Y+MD YP+GTNA VAVISYTGYDMEDAM +NKAS+
Sbjct: 649 DRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASW 708
Query: 1155 QRGFAHGTVIKVERINL---VTERERKTIFYRNPREE--IKTVGPDGLPIPGRRYFLDEV 991
+RGFAHG+V K E I+L + + + +F P + ++ + DGLP G + +
Sbjct: 709 ERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP 768
Query: 990 YYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFA 811
YY N+ TG+ + E +++ G K I R+ RNP IGDKFA
Sbjct: 769 YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVRITMRVPRNPTIGDKFA 828
Query: 810 SRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGEN 631
SRHG+KGI S LWP E +PF+E+GMVPDI+FNPHGFPSRMTIGM+IESMAGK+AA HG
Sbjct: 829 SRHGRKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLC 888
Query: 630 YDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRH 451
+DA+PF+F+E+N+A+ +FGE+L AGYN+YG E YSG+ G ++E IF G+VYYQRLRH
Sbjct: 889 HDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH 948
Query: 450 MIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDR 271
M++DKFQVR TG D +T+QP+ GIRFGEMERDA++AHGTSF+L DRL NCSDR
Sbjct: 949 MVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDR 1008
Query: 270 DVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPR 91
VA+ C +CGSLLS L+ S + RK C C + D + + VP
Sbjct: 1009 SVAHVCVKCGSLLSPLLEKPPPSWSAMRNRK----------YNCTLCSRSDTIDTVSVPY 1058
Query: 90 VFRYLTAELAAMNVKIKLGI 31
VFRY AELAAMN+K+KL +
Sbjct: 1059 VFRYFVAELAAMNIKVKLDV 1078
>gi|47209534|emb|CAF89806.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 1071
Score = 917 bits (2369), Expect = 0.0
Identities = 494/1123 (43%), Positives = 686/1123 (60%), Gaps = 38/1123 (3%)
Frame = -1
Query: 3282 LKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNG 3103
+KN D +++ F A + KP + G + L + PAECR R +Y G L I VNG
Sbjct: 1 MKN-DKISITFVEATILKPMVAKGTVCSQ--LKVYPAECRGRRCSYKGKLVADISWSVNG 57
Query: 3102 SRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIA 2923
II+ LG +PIM++S+ C+LRG++ +L E GGYFIVNG EKVIR+LI
Sbjct: 58 VPRGIIKQTLGHLPIMVKSQLCNLRGLTPTQL--------EMGGYFIVNGIEKVIRMLIM 109
Query: 2922 NRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREI 2743
RRN+P+A+ R +K +G+ ++++G+ MR VKE+HTAV MTLHYLD GT+ L +++E+
Sbjct: 110 QRRNYPVAMSRPKWKSRGQGYTQYGISMRCVKEDHTAVNMTLHYLDNGTVMLNFIYQKEL 169
Query: 2742 FYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAI 2563
F++PL + +KAL D D I +GR + FY + +L+ L
Sbjct: 170 FFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKNQVLSFL------------------ 211
Query: 2562 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECA 2383
G RFRV ++ + W + ++ +C+ IHL SD EKF+ L MT+KL K EC
Sbjct: 212 GERFRVKMN--LPEWYTHQQCATILLEDCICIHLKSDAEKFNLLCLMTRKLFTFAKQECM 269
Query: 2382 PETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGN 2203
E PD+ FQE G + L+ L+ERM + V+ E ++R + ++ +++K
Sbjct: 270 EENPDSITFQEVLTPGQLYLMFLKERMAAWLVSVKLACEKKATRLNLSWSADSVMKIFNM 329
Query: 2202 HTGGEITRGMAYFLATGNLVTRVGLA--------------------LQQESGFSVIAERI 2083
T +I++ Y LATGNL ++ G+A + Q +G V+A+++
Sbjct: 330 AT--DISKSFEYLLATGNLSSKSGMAAAARAAPGRRADRCCLAGLGMLQSTGLCVVADKL 387
Query: 2082 NQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRI 1903
N +R++SHFR +HRGA F +MRTT VRKL PE+WGF+CPVHTPDG PCGL+NH+TA+C I
Sbjct: 388 NFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTANCEI 447
Query: 1902 VTDLSDNSNVPSLLAELGMYTHKTVALAPPGE---ELYPVLMNGRFLGYVPITKAASIER 1732
V + ++P+LL LG+ T PG+ + YPV+++G +G+V A ++
Sbjct: 448 VAQTASTVSLPALLCSLGV----TPVDGSPGQAYSDCYPVVLDGAVVGWVESDLAPAVVD 503
Query: 1731 YLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVE 1552
LR KV ++ +IP +EI LV ++ + YP + + + R++RPV+NL + E
Sbjct: 504 ALRRFKVLREKKIPPWTEIVLVPKTGK----PSLYPALLLFTTPCRMMRPVQNLTLGKQE 559
Query: 1551 HIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMG 1372
IGTFEQ+Y++V + E + GVT HQEL P + S N IP+ DHNQSPRN+YQCQMG
Sbjct: 560 LIGTFEQLYMNVGVFAAEVQAGVTTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQCQMG 619
Query: 1371 ----------KQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNAC 1222
KQTMG +H + R+DNK+YRLQ PQ P+++ Y+ Y +D YP GTNA
Sbjct: 620 ECRDGSVDGGKQTMGFPLHTFADRSDNKLYRLQTPQSPLVRPSMYDHYSLDNYPSGTNAV 679
Query: 1221 VAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLV--TERERKTIFYR---NPRE 1057
VAVISYTGYDMEDAM +NKAS++RGFAHG++ K E ++L + + +F +PR
Sbjct: 680 VAVISYTGYDMEDAMIVNKASWERGFAHGSIYKTEVVDLAERVKGDDSVVFGTTPGDPRV 739
Query: 1056 EIKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS 877
E K + DGLP G + +Y ++ TG + E +++ G
Sbjct: 740 EDK-LDADGLPHIGSVLRYGDPFYSYVDLNTGQSSVSYYRSQEACVVDNIKVCSNDSGAG 798
Query: 876 GAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPS 697
KH I R+ RNP IGDKFASRHGQKGI S LWP E +PF+E+GM PDI+FNPHGFPS
Sbjct: 799 RFKHVCITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMCPDILFNPHGFPS 858
Query: 696 RMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSG 517
RMTIGM+IESMAGK+ A HG ++DA+PF F+ED +A+ +FGE+L GYNYYG E YSG
Sbjct: 859 RMTIGMLIESMAGKSGALHGLSHDATPFTFSEDTSALEYFGEMLRAGGYNYYGTERLYSG 918
Query: 516 VDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMER 337
+ G+++E IF G+VYYQRLRHM++DKFQVR TG D +T+QPV GIRFGEMER
Sbjct: 919 LSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMER 978
Query: 336 DAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDY 157
DA++AHG+SF+L DRL NCSDR VA C CGSLLS L+ + RK
Sbjct: 979 DALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLEKPPPYWSATRHRK------- 1031
Query: 156 TETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 28
C C + D + L VP VFRY AELAAMN+K+KL ++
Sbjct: 1032 ---TVCMLCGRSDSIASLSVPYVFRYFVAELAAMNIKVKLEVK 1071
>gi|13929088|ref|NP_113961.1| RNA polymerase 1-2; RNA polymerase I
(127 kDa subunit) [Rattus norvegicus]
gi|3914801|sp|O54888|RPA2_RAT DNA-directed RNA polymerase I 135 kDa
polypeptide (RNA polymerase I subunit 2) (RPA135) (RNA
polymerase I 127 kDa subunit)
gi|7513965|pir||T42368 DNA-directed RNA polymerase (EC 2.7.7.6) I
second largest chain - rat
gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus
norvegicus]
Length = 1135
Score = 911 bits (2355), Expect = 0.0
Identities = 489/1136 (43%), Positives = 677/1136 (59%), Gaps = 21/1136 (1%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTS 3196
D+ HVDSF++ V +G A QA+P +F K+ + +++ A + P + G
Sbjct: 37 DLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKD-ERISLTIVDAAISPPAVPKGT--IC 93
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
L + PAECR R TY G L I VNG II+ LG VPIM++S+ C+L +
Sbjct: 94 KELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFLGXVPIMVKSKLCNLYNLPP 153
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
+ L+ EE E GGYFI+NG EKVIR+LI RRNFPIA+IR +K +G +++FGV +
Sbjct: 154 QVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSIH 213
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRN 2656
V+E H+AV M LHY++ GT+ L +R+E+F++PL + +KAL +D I +G+
Sbjct: 214 CVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKE 273
Query: 2655 QDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIREC 2476
+D F+ + + ML EE Q+ + +G RFRV +S + W + EA F+ +C
Sbjct: 274 EDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVKLS--LPDWYPNAEAAEFLFNQC 331
Query: 2475 VLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 2296
+ IHL S+ +KF+ L MT+KL AL +GEC + PD+ QE G + L+ L+E+MEN
Sbjct: 332 ICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMEN 391
Query: 2295 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 2116
+ ++ L+ + + + + + ++K G E+TR Y LATGNL ++ GL Q
Sbjct: 392 WLLSIKIALDKRAQKTNVSINNENLMKIFS--MGTELTRPFEYLLATGNLRSKTGLGFMQ 449
Query: 2115 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 1936
+SG V+A+++N +R++SHFR +HRGA F +MRTT VRKL PE+WGF+CPVHTPDGAPCG
Sbjct: 450 DSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCG 509
Query: 1935 LLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI 1756
LLNH+TA C +VT +++P+LL LG+ T A P + YPVL++G +G+V
Sbjct: 510 LLNHLTAVCEVVTKFVYTASIPALLCGLGV-TPVDAAPCRPYSDCYPVLLDGVMVGWVDK 568
Query: 1755 TKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVR 1576
A + LR KV ++ R K + P + L P
Sbjct: 569 ELAPEVADTLRRFKVLRERRCSSLDGGGPDSHDRKAKPVPRAVPLHHSLQAGEACAEPGA 628
Query: 1575 NLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELH----------------PSCLFS 1444
+ G +H+ H PS
Sbjct: 629 GQRRARWNY--------------------GAALHEHCHLRGRGFWWSFHTPGALPSQPAE 668
Query: 1443 FAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYE 1264
N IPF DHNQSPRN+YQCQMGKQTMG + + R+DNK+YRLQ PQ P+++ Y+
Sbjct: 669 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYD 728
Query: 1263 KYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL---VTER 1093
Y+MD YP+GTNA VAVISYTGYDMEDAM +NKAS++RGFAHG+V K E I+L +
Sbjct: 729 HYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQG 788
Query: 1092 ERKTIFYRNPREE--IKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAY 919
+ +F P + ++ + DGLP G + + YY N+ TG+ + E
Sbjct: 789 DDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCV 848
Query: 918 CGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETG 739
+++ G K + R+ RNP IGDKFASRHGQKGI S LWP E +PF+E+G
Sbjct: 849 VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESG 908
Query: 738 MVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTK 559
M+PDI+FNPHGFPSRMTIGM+IESMAGK+AA HG +DA+PF+F+E+N+A+ +FGE+L
Sbjct: 909 MMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKA 968
Query: 558 AGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXX 379
AGYN+YG E YSG+ G ++E IF G+VYYQRLRHM++DKFQVR TG D +T+QP+
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 378 XXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSH 199
GIRFGEMERDA++AHGTSF+L DRL NCSDR VA+ C +CGSLLS L+ S
Sbjct: 1029 RNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSW 1088
Query: 198 LLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
+ RK C C + D + + VP VFRY AELAAMN+K+KL +
Sbjct: 1089 SAMRNRK----------YNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|50756081|ref|XP_415007.1| PREDICTED: similar to RNA polymerase I
polypeptide B; DNA-directed RNA polymerase I 135kDa
polypeptide; RNA polymerase I subunit 2 [Gallus gallus]
Length = 2130
Score = 892 bits (2305), Expect = 0.0
Identities = 472/1082 (43%), Positives = 657/1082 (60%), Gaps = 44/1082 (4%)
Frame = -1
Query: 3129 VGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGS 2950
V I VN I+ +G VPIM++S+ C+L +S +EL+ EE E GGYFI+NG
Sbjct: 294 VDISWSVNDIPQGTIKHPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGL 353
Query: 2949 EKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQ 2770
EKVIR+LI RRNFP+A+ R +K +G F+E+GV+M VK+ H+A+ M LHYL+ G +
Sbjct: 354 EKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVM 413
Query: 2769 LALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEIL 2590
+ F++E+F++P AL + D I + + D FY +C+ ML E
Sbjct: 414 VNFIFQKELFFLP------ALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLRAVAEAGCY 467
Query: 2589 NQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKL 2410
Q+ + +G FRV ++ + W + +A FI +C+ IHL EKF+ L MT+KL
Sbjct: 468 TQQNVLEYLGKSFRVKLN--LPEWYSNEQAADFIFNKCICIHLTDRTEKFYLLCMMTRKL 525
Query: 2409 IALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTS 2230
A KGEC + PD+ QE +G + L+ L+ER+EN + V+ LE + + D + +
Sbjct: 526 CAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININA 585
Query: 2229 AAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRA 2050
+++KA T ++T+ Y LATGNL ++ GL + Q+SG V+ +++N +R++SHFR
Sbjct: 586 DSLMKAFNMTT--DVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRC 643
Query: 2049 IHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVP 1870
IHRG+ F +MRTT VRKL PE+WGF+CPV TPDG PCGL+NH+TA C IVT++ +++P
Sbjct: 644 IHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLP 703
Query: 1869 SLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIP 1690
LL LG+ + P E Y VL++G +G+V A + LR K+ ++ R P
Sbjct: 704 PLLCALGVVPIDATP-SRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKITQEKRFP 762
Query: 1689 YTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVL 1510
+E+ L+ + + YPG++I + R++RPV+NL E IGT EQV+++V
Sbjct: 763 SRAEVVLI----PMTGKPSLYPGLFIFTTPCRMVRPVKNLLYGRKEWIGTLEQVFMNVAT 818
Query: 1509 DPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQM--------------- 1375
+ PGVT HQEL P + S NLIPF DHNQSPRN+YQCQM
Sbjct: 819 MESDVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMDECGALHQLLGGVSI 878
Query: 1374 ------------------------GKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAY 1267
GKQTMG V+ + R+DNK+Y L PQ P+++ Y
Sbjct: 879 NNCAGRSSLIPQLAEVVLLLTSSRGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMY 938
Query: 1266 EKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERER 1087
+ Y MD YP+GTN+ VAVISY+GYDMEDAM +NK+S++RGFA+G+VIK+E I+L + R
Sbjct: 939 DYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANR 998
Query: 1086 ---KTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPA 922
+F P + + + DGLP G + +Y N+ TG+ T + E
Sbjct: 999 GGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVG 1058
Query: 921 YCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSET 742
+++ G K A I R+ RNP +GDKFASRHGQKGI S LWPVE +PF+E
Sbjct: 1059 IVDNIKLCSNDRGTGKFKKACITVRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTEN 1118
Query: 741 GMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLT 562
GMVPDI+FNPHGFPSRMTIGM+IESMAGK+AA HG YDA+PF F E N+A+ +FGE L
Sbjct: 1119 GMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGAYYDATPFTFTEKNSALKYFGETLV 1178
Query: 561 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVX 382
AGYN++G E YSG+ G ++E IF G+VYYQRLRHM++DKFQVR TGP D +T+QP+
Sbjct: 1179 SAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPIK 1238
Query: 381 XXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGS 202
GIRFGEMERDA++AHGTSF+L DRL +CSD AY C CGS+LS L+ S
Sbjct: 1239 GRNVEGGIRFGEMERDALLAHGTSFLLHDRLFSCSDGCEAYVCTSCGSMLSPLLQRPPPS 1298
Query: 201 HLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHP 22
+ +R C C + D + ++ VP VFRY AELAAMN+K++L +E
Sbjct: 1299 SVASSRR-----------YSCMLCGRMDTIQIIPVPHVFRYFLAELAAMNIKLRLTLEQA 1347
Query: 21 SK 16
S+
Sbjct: 1348 SR 1349
>gi|31202407|ref|XP_310152.1| ENSANGP00000020031 [Anopheles gambiae]
gi|21293698|gb|EAA05843.1| ENSANGP00000020031 [Anopheles gambiae str.
PEST]
Length = 1153
Score = 884 bits (2284), Expect = 0.0
Identities = 478/1134 (42%), Positives = 690/1134 (60%), Gaps = 21/1134 (1%)
Frame = -1
Query: 3360 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 3181
H+DSF++++ +G + + F + NG + ++ T + PT+ ++ +
Sbjct: 40 HIDSFNYMLDEGIEDVLSRLVPVCFEMANGSRIKLRITDISIAPPTVPMMLVEVAEKR-V 98
Query: 3180 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 3001
P+ECRQ+ TYAG + ++ ++G + +G++PIMLRS C+L + +ELV
Sbjct: 99 FPSECRQKSDTYAGMCTITLNWELDGMPQSPLTREMGRIPIMLRSNACNLANATPEELVA 158
Query: 3000 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 2821
GE E GGYF+V G+EK+IR+LI+ RRN+PIA+ R T++++GK FS GV +R V+E+
Sbjct: 159 RGEHEDEWGGYFVVRGNEKLIRMLISTRRNYPIAVNRNTWRDRGKDFSATGVFIRCVRED 218
Query: 2820 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFY 2641
+ LHYL GT +L + R + ++P+M I+KAL D++D I DQ+Y
Sbjct: 219 QYSTRNVLHYLTNGTAKLMISVSRALSFIPVMMILKALGDRSDNEIYKKLTACDESDQYY 278
Query: 2640 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAP-WEDDLEAGRFIIRECVLIH 2464
CI+ ML E + + + +G R + D P W D +AG F+++ CVLIH
Sbjct: 279 KRCIMAMLRDLHAENLHSSQECRSYMGMLLRRRLMDINLPAWYSDEQAGHFLLQHCVLIH 338
Query: 2463 LDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGM 2284
LDS E+KF+ L +M KL A+V+G A E+ D QE + GHI +LRE + +
Sbjct: 339 LDSVEDKFNLLVHMVHKLYAVVQGRHAVESLDGTMMQEILLGGHIYQGLLREMCLSTMQY 398
Query: 2283 VRRKL-EYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESG 2107
VR L + R ++T+ + +AL N G + FLATGNL + L Q +G
Sbjct: 399 VRINLMKLCPDRTSPMVTTHELAQALKNVAGFQ--HPFTMFLATGNLAKATEMGLMQSTG 456
Query: 2106 FSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLN 1927
+IAE IN++R++SHFRA+HRG++F+ MRTT+ R+L P+AWGFICPVHTPDG PCGLLN
Sbjct: 457 LVIIAENINRMRYMSHFRAVHRGSYFLTMRTTEARQLLPDAWGFICPVHTPDGEPCGLLN 516
Query: 1926 HVTASCRI--VTDLSDNSNVPSLLAELGMYTHKTVALA---PPGEELYPVLMNGRFLGYV 1762
H+T+ C + D +N+P+ L LGM A + ++ Y V++ G+ LG +
Sbjct: 517 HMTSDCTVSVTQDPELVANIPATLVSLGMQPFGGDAGSFGTLSHDDGYVVMLEGKMLGML 576
Query: 1761 PITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRP 1582
A+ + + LR K+ + IP +EIA V QYPG+++ R++RP
Sbjct: 577 ARATASQVVQKLRLLKI-EGKTIPNQTEIAFVPAREG-----GQYPGLFLFVGPARMMRP 630
Query: 1581 VRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQS 1402
V+NL E IG+FEQVY+ + + PEEA P +T H EL + S LIP PD NQS
Sbjct: 631 VKNLLCGKTELIGSFEQVYMDICVTPEEAYPQLTTHAELAKTSFMSNLAQLIPMPDCNQS 690
Query: 1401 PRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNAC 1222
PRN+YQCQMGKQTMGT H W + KMYRLQ P P+ + ++ +D Y +GTNA
Sbjct: 691 PRNMYQCQMGKQTMGTPCHNWDKQCIAKMYRLQTPATPLFRPVHHDNIALDNYAMGTNAI 750
Query: 1221 VAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKTV 1042
VAVISYTGYDMEDAM INKA+++RGFA G + K E + L + + F RNP++ T+
Sbjct: 751 VAVISYTGYDMEDAMIINKAAFERGFAAGNIYKHEYVELTGD----SFFARNPKDA--TL 804
Query: 1041 GP----DGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRI------VEQ 892
P DGLP G + Y F++ + + E A V++ +
Sbjct: 805 NPFLDNDGLPFKGAQLTKGTPLYCYFDVNDHTYHVVSYQGYEEAIVDNVKLGAPLQDAGR 864
Query: 891 GEGDSG----AKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDI 724
G G G K ++ +R+ RNP +GDKFASR GQKGI S WP LPF+E+GM+PDI
Sbjct: 865 GIGRGGMAIVTKQLILTYRVPRNPSVGDKFASRAGQKGICSQHWPAIDLPFTESGMIPDI 924
Query: 723 IFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNY 544
IFNPHGFPSRMTI MMIE+MAGK AA G +DA+PF ++E NTAI++FG LL ++GY+Y
Sbjct: 925 IFNPHGFPSRMTIAMMIETMAGKTAACQGLVHDATPFRYDESNTAIDYFGRLLEQSGYDY 984
Query: 543 YGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXX 364
YG E YSGVDGR+M++ IFFG+V+YQRLRHM++DK+QVR+TGPID +THQP
Sbjct: 985 YGTERMYSGVDGREMKVDIFFGVVHYQRLRHMVSDKWQVRSTGPIDQLTHQPNKGRSRGG 1044
Query: 363 GIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKK 184
G+RFGEMERD +I+HG SF+LQDRL++ SD+ VA CRRCG+L+ + S + K+
Sbjct: 1045 GVRFGEMERDGLISHGASFLLQDRLVHGSDKVVALVCRRCGTLIGPIDS------VTKRL 1098
Query: 183 RKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHP 22
+ L + CR C+ D ++ +++P +F++L ++L +MN+ +KL + +P
Sbjct: 1099 ADNSNQLQHVPA-TCRLCEDDKEIGHVEIPYIFKFLVSQLTSMNINVKLQLSYP 1151
>gi|19112611|ref|NP_595819.1| DNA-directed RNA polymerase subunit
[Schizosaccharomyces pombe]
gi|12230600|sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase
I polypeptide 2 (RNA polymerase I subunit 2)
gi|11261304|pir||T50394 DNA-directed RNA polymerase subunit
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6723961|emb|CAB66435.1| SPBP23A10.07 [Schizosaccharomyces pombe]
Length = 1227
Score = 874 bits (2258), Expect = 0.0
Identities = 488/1157 (42%), Positives = 690/1157 (59%), Gaps = 46/1157 (3%)
Frame = -1
Query: 3360 HVDSFDFLVSKG------------CQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLD 3217
HVDSF+ L + G C F + E LK G+ ++ + Q+ KP L
Sbjct: 85 HVDSFNALTNAGLLNYAVKEIGEKCAFDS-ITQEEGGALKFGNKISFRVDEVQIAKPMLS 143
Query: 3216 TGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGC 3037
+ + +S + PAE R+R TY L + VNG +G +PIM+RS C
Sbjct: 144 SRER-SSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNRC 202
Query: 3036 HLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFS 2857
HL G+S EL+ EE E GGYFIVNG EK+IR+LI +RN P AIIR +F +G +S
Sbjct: 203 HLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYS 262
Query: 2856 EFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISA 2677
++G+ +R V+ + +++ TLHYL+ G +R+ + +P M I+KAL + +D I
Sbjct: 263 QYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFE 322
Query: 2676 GFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAG 2497
G + F + + ML + + +Q ++ +GS+FRV + VA D+E G
Sbjct: 323 GIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLG--VAEDLTDVEVG 380
Query: 2496 RFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLI 2317
RF++++ VL+HL ++KF L +M +KL ALV GEC + PD+PQ QE + G + I
Sbjct: 381 RFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQI 440
Query: 2316 LRERMENIIGMVRRK--LEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLV 2143
L+E++E+ + +R + L+ S + L + + +I + YFL+TGNLV
Sbjct: 441 LKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLV 500
Query: 2142 TRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPV 1963
+ GL LQQ +G++V+AE++N RF+SHFR +HRGAFF E++TT VRKL PEAWGF+CPV
Sbjct: 501 SNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPV 560
Query: 1962 HTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELY--PVL 1789
HTPDG+PCGLLNH+ C IVT SD S +PSLL LG+ V G E V
Sbjct: 561 HTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVV-----GHESGWGCVQ 615
Query: 1788 MNGRFLGYVPITKAASIERYLRCAKV-----------AKDARIPYTSEIALVRRSTDIKN 1642
++G+ +G+ A + LR K+ + A++P EI V S +
Sbjct: 616 LDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHN--- 672
Query: 1641 IQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELH 1462
QYPG+Y+ S+ R++RPV++++ ++ +G FEQVY+ + P+E P V+ H E
Sbjct: 673 --GQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYS 730
Query: 1461 PSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPML 1282
P+ + S N+ PF D NQSPRN+YQCQMGKQTMGT A R DNK+YRLQ Q P++
Sbjct: 731 PTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVV 790
Query: 1281 KLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLV 1102
+ + + Y +D YP GTNA VAVISYTGYDMEDAM +NK++++RGF +GTV K E +L
Sbjct: 791 RPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLS 850
Query: 1101 TERERKTIFYRN--------PREE-IKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRT 949
+R R + PR E ++ + DGLP G + + ++ TG
Sbjct: 851 QKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFI 910
Query: 948 HKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWP 769
+H EP + VR++ GDS + ++ RI R+PIIGDKF+SRHGQKGI S WP
Sbjct: 911 ETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWP 970
Query: 768 VESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTA 589
+PF+E+GM PDII NPH FPSRMTIGM IES+AGKA A HG D++PF+++E TA
Sbjct: 971 TVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTA 1030
Query: 588 INHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPI 409
++FGE L KAGYNY+GNE YSG+ G++M+ I+ G+VYYQRLRHM++DKFQVR TGPI
Sbjct: 1031 ADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPI 1090
Query: 408 DPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLS 229
+T QPV GIRFGEMERDA+I HGTSF++QDRL+NCSD ++ CR CGS++S
Sbjct: 1091 HNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIIS 1150
Query: 228 VLMS---SRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVF-------LLQVPRVFRY 79
++ + + GS + R +P E D + F L+ +P VF Y
Sbjct: 1151 IMSTISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNY 1210
Query: 78 LTAELAAMNVKIKLGIE 28
LTAEL AMN+K+ L ++
Sbjct: 1211 LTAELTAMNIKMMLEVK 1227
>gi|17136446|ref|NP_476708.1| CG4033-PA [Drosophila melanogaster]
gi|7296211|gb|AAF51503.1| CG4033-PA [Drosophila melanogaster]
gi|18447630|gb|AAL68376.1| SD02110p [Drosophila melanogaster]
Length = 1129
Score = 874 bits (2257), Expect = 0.0
Identities = 471/1112 (42%), Positives = 680/1112 (60%), Gaps = 5/1112 (0%)
Frame = -1
Query: 3360 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 3181
HVDSFD +++ G +A+ + + G+ ++MK S + KP + + T +
Sbjct: 39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDV-IDVRTREI 97
Query: 3180 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 3001
P + RQ ++Y+G V + VNG + I + LG+VPIMLRS+ C+L + +E+V
Sbjct: 98 YPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVK 157
Query: 3000 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 2821
GE E GG F++ G+EK++R+LI RRN PI + R ++K++G+ FS+ G+++++V+E+
Sbjct: 158 HGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVRED 217
Query: 2820 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFY 2641
+++ +HYL+ GT + + + YVP+ I+K L D D I +G DQ+Y
Sbjct: 218 ESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYY 277
Query: 2640 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL 2461
SC+ ML + Q E + IG+ FR + V W+ D + FI+RE V+IHL
Sbjct: 278 VSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPE-VPEWQPDDDVTDFILRERVMIHL 336
Query: 2460 DSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMV 2281
D+ E+KF + +M QKL +G+ E D+ QE + GH+ L ER+E+ + V
Sbjct: 337 DTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQV 396
Query: 2280 RRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFS 2101
RR L+ + D ++TSA + + + G + R + FLATGN+ +R GL L Q SG
Sbjct: 397 RRCLQKKLTSPDALVTSAVMTQCM--RQAGGVGRAIESFLATGNIASRTGLGLMQNSGLV 454
Query: 2100 VIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHV 1921
++AE IN++R++SHFRAIHRG++F MRTT+ R+L P+AWGFICPVHTPDG PCGLLNH+
Sbjct: 455 IMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHL 514
Query: 1920 TASCRIVT--DLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKA 1747
T +C I D +P L ++GM GE+LY V ++G+ LG++ ++A
Sbjct: 515 TLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYL--GEKLYVVFLDGKHLGHIHQSEA 572
Query: 1746 ASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLA 1567
I LR K+ +P EI + + Q+PG+YI + R++RPV NL
Sbjct: 573 EKIVDELRYGKIF--GTLPQMMEIGFIPFKKN-----GQFPGLYIATGPARMMRPVWNLK 625
Query: 1566 MDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVY 1387
VE+IGT EQ+Y+ + +D +E P T H EL + S NLIP PD+NQSPRN+Y
Sbjct: 626 WKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMY 685
Query: 1386 QCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVIS 1207
QCQMGKQTMGT W +A NK+YRLQ P P+ + Y+ ++D++ +GTNA VAVIS
Sbjct: 686 QCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVIS 745
Query: 1206 YTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPR--EEIKTVGPD 1033
YTGYDMEDAM INKA+Y+RGFA+G++ K + + L ++ + F R+P E IK + D
Sbjct: 746 YTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL---DKKSSYFARHPHMPELIKHLDTD 802
Query: 1032 GLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGD-SGAKHALI 856
GLP PG + Y F+ E ++ K E C + I + G D S K I
Sbjct: 803 GLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKED--CIVESIRQLGSFDLSPKKMVAI 860
Query: 855 QWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 676
R+ R IGDKFASR GQKGI S +P E LPF+E+G++PDI+FNPHGFPSRMTI MM
Sbjct: 861 TLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMM 920
Query: 675 IESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQME 496
IE+MAGK AA HG YDA+PF F+E+NTAI++FG++L GYNYYG E YSGVDGR+M
Sbjct: 921 IETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMT 980
Query: 495 MQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHG 316
IFFG+V+YQRLRHM+ DK+QVR+TG ++ THQP+ G+RFGEMERDA+I+HG
Sbjct: 981 ADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHG 1040
Query: 315 TSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCR 136
+F+LQDRL + SD+ C +CGS+L+ L KR + L ++ CR
Sbjct: 1041 AAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRI--------VKRNETGGLS-SQPDTCR 1091
Query: 135 TCDKDDQVFLLQVPRVFRYLTAELAAMNVKIK 40
C + V ++++P F+YL EL+++N+ +
Sbjct: 1092 LCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>gi|133318|sp|P20028|RPA2_DROME DNA-DIRECTED RNA POLYMERASE I 135 KD
POLYPEPTIDE (RNA POLYMERASE I SUBUNIT 2)
gi|84933|pir||JQ0354 DNA-directed RNA polymerase (EC 2.7.7.6) I
second largest chain - fruit fly (Drosophila
melanogaster)
gi|8474|emb|CAA35185.1| RNA polymerase 3, second largest subunit
[Drosophila melanogaster]
Length = 1129
Score = 874 bits (2257), Expect = 0.0
Identities = 472/1112 (42%), Positives = 680/1112 (60%), Gaps = 5/1112 (0%)
Frame = -1
Query: 3360 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 3181
HVDSFD +++ G +A+ + + G+ ++MK S + KP + + T +
Sbjct: 39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDV-IDVRTREI 97
Query: 3180 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 3001
P + RQ ++Y+G V + VNG + I + LG+VPIMLRS+ C+L + +E+V
Sbjct: 98 YPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVK 157
Query: 3000 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 2821
GE E GG F++ G+EK++R+LI RRN PI + R ++K++G+ FS+ G+++++V+E+
Sbjct: 158 HGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVRED 217
Query: 2820 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFY 2641
+++ +HYL+ GT + + + YVP+ I+K L D D I +G DQ+Y
Sbjct: 218 ESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYY 277
Query: 2640 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL 2461
SC+ ML + Q E + IG+ FR + V W+ D + FI+RE V+IHL
Sbjct: 278 VSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPE-VPEWQPDDDVTDFILRERVMIHL 336
Query: 2460 DSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMV 2281
D+ E+KF + +M QKL +G+ E D+ QE + GH+ L ER+E+ + V
Sbjct: 337 DTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSSMMQEVLLPGHLYQKYLSERVESWVSQV 396
Query: 2280 RRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFS 2101
RR L+ + D ++TSA + + + G + R + FLATGN+ +R GL L Q SG
Sbjct: 397 RRCLQKKLTSPDALVTSAVMTQCM--RQAGGVGRAIESFLATGNIASRTGLGLMQNSGLV 454
Query: 2100 VIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHV 1921
++AE IN++R++SHFRAIHRG++F MRTT+ R+L P+AWGFICPVHTPDG PCGLLNH+
Sbjct: 455 IMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHL 514
Query: 1920 TASCRIVT--DLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKA 1747
T +C I D +P L ++GM GE+LY V ++G+ LG++ ++A
Sbjct: 515 TLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYL--GEKLYVVFLDGKHLGHIHQSEA 572
Query: 1746 ASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLA 1567
I LR K+ +P EI + + Q+PG+YI + RL+RPV NL
Sbjct: 573 EKIVDELRYGKIF--GTLPQMMEIGFIPFKKN-----GQFPGLYIATGPARLMRPVWNLK 625
Query: 1566 MDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVY 1387
VE+IGT EQ+Y+ + +D +E P T H EL + S NLIP PD+NQSPRN+Y
Sbjct: 626 WKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMY 685
Query: 1386 QCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVIS 1207
QCQMGKQTMGT W +A NK+YRLQ P P+ + Y+ ++D++ +GTNA VAVIS
Sbjct: 686 QCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDIIQLDDFAMGTNAIVAVIS 745
Query: 1206 YTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPR--EEIKTVGPD 1033
YTGYDMEDAM INKA+Y+RGFA+G++ K + + L ++ + F R+P E IK + D
Sbjct: 746 YTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL---DKKSSYFARHPHMPELIKHLDTD 802
Query: 1032 GLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGD-SGAKHALI 856
GLP PG + Y F+ E ++ K E C + I + G D S K I
Sbjct: 803 GLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKED--CIVESIRQLGSFDLSPTKMVAI 860
Query: 855 QWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 676
R+ R IGDKFASR GQKGI S +P E LPF+E+G++PDI+FNPHGFPSRMTI MM
Sbjct: 861 TLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMM 920
Query: 675 IESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQME 496
IE+MAGK AA HG YDA+PF F+E+NTAI++FG++L GYNYYG E YSGVDGR+M
Sbjct: 921 IETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMT 980
Query: 495 MQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHG 316
IFFG+V+YQRLRHM+ DK+QVR+TG ++ THQP+ G+RFGEMERDA+I+HG
Sbjct: 981 ADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHG 1040
Query: 315 TSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCR 136
+F+LQDRL + SD+ C +CGS+L+ L KR + L ++ CR
Sbjct: 1041 AAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRI--------VKRNETGGLS-SQPDTCR 1091
Query: 135 TCDKDDQVFLLQVPRVFRYLTAELAAMNVKIK 40
C + V ++++P F+YL EL+++N+ +
Sbjct: 1092 LCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>gi|46442218|gb|EAL01509.1| hypothetical protein CaO19.7062 [Candida
albicans SC5314]
Length = 1166
Score = 860 bits (2222), Expect = 0.0
Identities = 465/1106 (42%), Positives = 670/1106 (60%), Gaps = 24/1106 (2%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ + ++ S QL KP++ KL+ + P+ECR+R +TY L + + VN
Sbjct: 74 GNKLKIRVDSVQLAKPSVPANDKLSLNR-KTFPSECRERMVTYRSRLMLNVTWSVNDEE- 131
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
++ E+ G++PIML+S CHL +S +LV A EE E GGYFIVNG EK+IR+LI R
Sbjct: 132 EVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 191
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +++FG+ +RSV+ + T+ LHYL+ G + +R+ F
Sbjct: 192 RNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFL 251
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGS 2557
VP++ I+KAL + ND I G ++ F + + +L + + +Q+ + +G
Sbjct: 252 VPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGD 311
Query: 2556 RFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPE 2377
+FRV +P D+E G+ +++ VL+HL ++ +KF L +M +KL +LV G+CAP+
Sbjct: 312 KFRVVFG--ASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPD 369
Query: 2376 TPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFI-LTSAAILKALGNH 2200
PD Q QE + G + +I++E++E + ++ +++ +R I + + +
Sbjct: 370 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSR 429
Query: 2199 TGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEM 2020
I + + YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +HRG+FF E+
Sbjct: 430 INENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAEL 489
Query: 2019 RTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYT 1840
+TT VRKL PE+WGF+CPVHTPDG+PCGLLNH++ C+I T+ SD S VP L +LG+
Sbjct: 490 KTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLP 549
Query: 1839 HKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRR 1660
+ A P L V ++G+ +G+ + + LR KV +P EI V
Sbjct: 550 ADSFAAGP---NLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPP 606
Query: 1659 STDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVT 1480
S + QYPG+YI R++RPV+ L +D + +G FEQVY++V + PEE E +
Sbjct: 607 SN-----KGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIH 661
Query: 1479 MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQF 1300
H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A R+DNK+YRLQ
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 721
Query: 1299 PQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKV 1120
Q P++K Y+ Y MD +P G NA VAVISYTGYDM+DAM INK++ +RGF +GTV K
Sbjct: 722 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 781
Query: 1119 ERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDEVYYVTFNMET 964
E+++L R R ++ P + + DGLP+ G + + ++
Sbjct: 782 EKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTL 841
Query: 963 GDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGIN 784
G + +H +EPAY V+++ + + I++RI R P+IGDKF+SRHGQKG+
Sbjct: 842 GKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVC 901
Query: 783 SFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFN 604
S WP +PF+E+GM PD+I NPH FPSRMTIGM +ES+AGKA A HG D++P+ FN
Sbjct: 902 SRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFN 961
Query: 603 EDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVR 424
E +T ++FGE L KAGYNY+GNE YSG G ++ I+ G VYYQRLRHM+ DKFQVR
Sbjct: 962 EQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021
Query: 423 ATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRC 244
+TGP++ +T QPV GIR GEMERDA+I HGTSF+LQDRLLNCSD CR C
Sbjct: 1022 STGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSC 1081
Query: 243 GSLLSVLMS-SRAGSHLLKKKRKDDEPLDYTETQRCRTCDKD-------------DQVFL 106
GS+L+ S R GS + R+ LD E D D D
Sbjct: 1082 GSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGY---AADSDIWEDGHGKKFVGGDDTTT 1138
Query: 105 LQVPRVFRYLTAELAAMNVKIKLGIE 28
+ +P V +YL +EL+AM +K++ +E
Sbjct: 1139 VAIPFVLKYLDSELSAMGIKMRYNVE 1164
>gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 1193
Score = 850 bits (2197), Expect = 0.0
Identities = 459/1107 (41%), Positives = 669/1107 (59%), Gaps = 26/1107 (2%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHV---NG 3103
G ++ + L KP + KL + + P E R+R TY L V I V +G
Sbjct: 96 GTKLSYRIDRVALSKPLVPEKDKLAVERR-VFPTEARERLATYRSKLTVNIKWTVTDEDG 154
Query: 3102 SRLDIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLI 2926
+R + EI G +P+M+RS C+L+G+ EL+ EE GGYFIVNG+EK+IR L+
Sbjct: 155 NRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIKHSEESTSFGGYFIVNGNEKIIRYLV 214
Query: 2925 ANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRRE 2746
RR+ PI + R +F ++G ++ +G +R V+ + TA T+HYL G L +R+
Sbjct: 215 VPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLSNGGATLRFAWRKV 274
Query: 2745 IFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRA 2566
+ +PLM I+KAL D +D I G +G + F + + +L + + +
Sbjct: 275 EYMIPLMLILKALVDASDKEIFEGLIQGEYDNTFLTDRVELLLRGQKSWGLHTGAQCLDY 334
Query: 2565 IGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGEC 2386
+G +FRV ++ V +++ G +++R+ VL+HL + +KF L +M +KL + V G
Sbjct: 335 LGEKFRVVLN--VPDDWSNVQVGGYLLRKVVLVHLPAPRDKFRMLLFMLRKLYSQVSGAT 392
Query: 2385 APETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEY-MSSRKDFILTSAAILKAL 2209
P+ PD+PQ E + G + +I++ER ++ + V+ +++ + K ++
Sbjct: 393 CPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQIQLDLRDGKARSFMDPKYFTSV 452
Query: 2208 GNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFF 2029
+ T +I ++YFLATGNLV+ GL LQQ SGF+++AE++N R++SHFR IHRGAFF
Sbjct: 453 LSKTNWDIGSKLSYFLATGNLVSPTGLDLQQTSGFTIVAEKLNFYRYLSHFRCIHRGAFF 512
Query: 2028 MEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELG 1849
E++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH++ +C+IVT D S++P+LL+ G
Sbjct: 513 AELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLSHTCQIVTSSLDVSHIPALLSAQG 572
Query: 1848 MYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIAL 1669
M + A + G + + ++G+ +GY KA + LR K D+++P EI
Sbjct: 573 MT--QVFASSIDGRRMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADSKVPLDLEIGY 630
Query: 1668 VRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEP 1489
V + QYPG+Y+ + R++RPV L ++H+G+FEQVY+ V + EE E
Sbjct: 631 VPVTKG-----GQYPGLYLFASRSRMMRPVTYLENGKLDHLGSFEQVYMDVAITKEEIEK 685
Query: 1488 GVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYR 1309
GV+ H EL P+ + S N+ PF D NQSPRN+YQCQMGKQ+MGT A R DNKMYR
Sbjct: 686 GVSSHVELDPTSMLSVIANMTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYR 745
Query: 1308 LQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTV 1129
LQ Q P+++ + + +Y D +P GTNA VAVISYTGYDMEDAM +NK++++RGF +GTV
Sbjct: 746 LQSGQTPVVRPDLHNQYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTV 805
Query: 1128 IKVERINLV----TERERKTIFYRNPREEIKT-------VGPDGLPIPGRRYFLDEVYYV 982
K + +L R K + ++K + DGLPI G R +
Sbjct: 806 YKADIFDLKGVPGASRSAKPTLHFGLGRDVKEDHDARNIISQDGLPIIGTRVKAGDPLCA 865
Query: 981 TFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRH 802
+ TG + HK+ E A+ VR++ GD+ + I+ RI R+P+IGDKF+SRH
Sbjct: 866 YIDDTTGRTKFHKYKGDETAFIDEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRH 925
Query: 801 GQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDA 622
GQKG+ S +P +PFSE+GM PD+I NPH FPSRMTIGM +ESMAGKA A HG DA
Sbjct: 926 GQKGVCSQKFPAIDMPFSESGMQPDVIINPHAFPSRMTIGMFVESMAGKAGALHGLAQDA 985
Query: 621 SPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIA 442
+PF F++ + +++FGE L AGYNYYGNE YSG+ G + I+ G+VYYQRLRHM+
Sbjct: 986 TPFKFSDKDRPVDYFGEQLRAAGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHMVN 1045
Query: 441 DKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVA 262
DKFQVR TGP+DP+T QPV GIRFGEMERDA+IAHGTSF+LQDRL+NCSD A
Sbjct: 1046 DKFQVRTTGPVDPLTRQPVKGRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTA 1105
Query: 261 YACRRCGSLLSVLMSSRAGSHLLKKKRK--DDEPLDYTETQR--------CRTCDKDDQV 112
+ CR CGSL+S+ G+ +++ + D ++ E R +K ++
Sbjct: 1106 WVCRNCGSLVSLGFEEVGGAQGMQEYCRICDGHKHEHAEEMSKENGVGVVMRGGEKKGRM 1165
Query: 111 FLLQVPRVFRYLTAELAAMNVKIKLGI 31
++ VP VFRYL AE+A M +K+ + +
Sbjct: 1166 DVVPVPYVFRYLCAEMACMGIKLNVTV 1192
>gi|50552684|ref|XP_503752.1| hypothetical protein [Yarrowia
lipolytica]
gi|49649621|emb|CAG79343.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
Length = 1165
Score = 849 bits (2193), Expect = 0.0
Identities = 459/1110 (41%), Positives = 674/1110 (60%), Gaps = 28/1110 (2%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ + ++ + QL +PT+ K T + + P+ECR+R TY + + + VNG
Sbjct: 74 GNRLAIRVANVQLGRPTVSANDKTTINR-KVFPSECRERMATYRARMVLTLGYSVNGGPE 132
Query: 3093 DIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRR 2914
+G +PIM+ S CHL GM K++V EE E+GGYF++NG EK+IRLLI RR
Sbjct: 133 KFESRDVGMIPIMMGSNRCHLEGMGPKDMVAHKEESEEQGGYFVINGLEKLIRLLIVQRR 192
Query: 2913 NFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYV 2734
N P+AIIRK+F ++G ++ FGV +RSV+ + ++ LHYL G + + +R+ + V
Sbjct: 193 NHPLAIIRKSFTKRGSNYTTFGVQIRSVRPDQSSQTNVLHYLSDGGITMRFSWRKNEYLV 252
Query: 2733 PLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSR 2554
P+M I+KAL + ND I G + F + + +L + ++ +++ + +G +
Sbjct: 253 PVMMILKALVETNDREIFDGIVASEGSNSFLTDRLELLLRNYKSYKLTSKQENLAFLGEK 312
Query: 2553 FRVAVSDRVAPWE-DDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPE 2377
FR+ + AP + + + GR +++ +L+HL + +KF L +M +KL ALV EC+P+
Sbjct: 313 FRIVMD---APKDMSNEDVGRLMLKRVILVHLQDNTDKFRMLLFMIRKLYALVASECSPD 369
Query: 2376 TPDNPQFQEASVSGHILLLILRERME----NIIGMVRRKLEYMSSRKDFILTSAAILKAL 2209
PD Q QE + G + +I++ERME N VR +L+ ++ L I++ +
Sbjct: 370 NPDAVQHQEVLLGGFLYGMIIKERMEEYLSNFCATVRTELQ--KKKQSLHLDDPKIMQRI 427
Query: 2208 GNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFF 2029
+I R + YFL+TGNLV+ GL LQQ +G++VI E+IN RF++HFR IHRG+FF
Sbjct: 428 CPRINEDIGRKLHYFLSTGNLVSHTGLDLQQTTGYTVIVEKINFHRFIAHFRMIHRGSFF 487
Query: 2028 MEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELG 1849
E++TTDVRKL PE+WGF+CPVHTPDG+PCGLLNH+ C I SD ++ S+L +LG
Sbjct: 488 AELKTTDVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLISVKKSDVGDIDSVLNQLG 547
Query: 1848 MYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIAL 1669
+ +A P + V+++G+ +G+ A +R KV DAR+P E+ L
Sbjct: 548 ISPAGALANTP---QKSVVMLDGKIIGWCTHEIAQQAANTIRQWKVTGDARLPQDLEVGL 604
Query: 1668 VRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEP 1489
V S QYPG+Y+ ++A R +RPV++LA + + +G FEQVYL+V + P+E
Sbjct: 605 VPPSRG-----GQYPGLYLFAEASRFMRPVKHLATEKEDIVGPFEQVYLNVAVTPDEIT- 658
Query: 1488 GVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYR 1309
V H E P+ + S N+ PF D NQSPRN+YQCQMGKQ MGT H R+DNKMYR
Sbjct: 659 NVHSHVEYSPTNILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGVLTH-RSDNKMYR 717
Query: 1308 LQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTV 1129
LQ Q P+++ +++Y +D +P G NA VAVISYTGYDM+DAM INK++++RGF HGT+
Sbjct: 718 LQTGQSPIVRAGLFDEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTI 777
Query: 1128 IKVERINLVTERERK---TIFYRN------PREEIKTVGPDGLPIPGRRYFLDEVYYVTF 976
K E+++L TE+++ T+ + PRE +T+ DGLP+ G + + +
Sbjct: 778 YKTEKVDL-TEKQKPGDPTLLHFGFGPDNWPREWTQTLDVDGLPLVGAKLSNGDPIAAYY 836
Query: 975 NMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHAL-IQWRIERNPIIGDKFASRHG 799
+ + K+ E + V+++ G+ G + ++ RI R+P+IGDKF+SRHG
Sbjct: 837 DSNSNKTMCLKYKSGETGFVEEVKLL--GDDSLGELQKITVKLRIPRSPVIGDKFSSRHG 894
Query: 798 QKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDAS 619
QKG+ S WP +PFSE+G+ PD+I NPH FPSRMTIGM +ES+A K+ A HG DA+
Sbjct: 895 QKGVCSQKWPTYDMPFSESGIQPDVIINPHAFPSRMTIGMFVESLAAKSGALHGMAQDAT 954
Query: 618 PFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIAD 439
P+ F+E NTA +FGE L KAGYNY+GNE YSGV G+++ I+ G+V+YQRLRHM+ D
Sbjct: 955 PWQFSETNTAAEYFGEQLLKAGYNYHGNEPMYSGVTGQELRCDIYVGVVFYQRLRHMVND 1014
Query: 438 KFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAY 259
KFQVR+TGP++P+T QPV GIR GEMERDA+I HGTS++LQDRLLNCSD
Sbjct: 1015 KFQVRSTGPVNPLTMQPVKGRKRSGGIRVGEMERDALIGHGTSYLLQDRLLNCSDYTQTS 1074
Query: 258 ACRRCGSLLSV------------LMSSRAGSHLLKKKRKDDEPLDYTETQRCRTC-DKDD 118
CR CGSL + + R + L K D P + C D
Sbjct: 1075 MCRTCGSLTATQEAQSTTGHRRGVKCRRCATQLEKDSFSWDSPPEGMWQDAIGNCFVGGD 1134
Query: 117 QVFLLQVPRVFRYLTAELAAMNVKIKLGIE 28
+ +P V +YL +EL+AM +K+K I+
Sbjct: 1135 DTTTVAIPFVLKYLNSELSAMGIKMKYNID 1164
>gi|50425489|ref|XP_461338.1| unnamed protein product [Debaryomyces
hansenii]
gi|49657007|emb|CAG89744.1| unnamed protein product [Debaryomyces
hansenii CBS767]
Length = 1167
Score = 848 bits (2190), Expect = 0.0
Identities = 458/1106 (41%), Positives = 667/1106 (59%), Gaps = 24/1106 (2%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ + ++ S QL KP++ KL+ + P+ECR+R TY L + + VN
Sbjct: 72 GNKLNIRVESVQLAKPSVPVNDKLSINRRTY-PSECRERMSTYRSRLMLKVTWSVNDGD- 129
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
++ EI G+VP+ML++ CHL +S ELV EE E GGYFIVNG EK+IR+LI R
Sbjct: 130 EVSEIREAGQVPVMLKTNRCHLEKLSPSELVDQKEESDEMGGYFIVNGIEKLIRMLIVQR 189
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +++FG+ +R V+ + T+ LHYL+ G + +++ +
Sbjct: 190 RNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWKKNEYL 249
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGS 2557
VP M I+KAL + ND I G + F + + +L ++ + +++ + +G
Sbjct: 250 VPAMMILKALIETNDREIFDGIIGADTSNSFLTDRLELLLRTYKQYNLYSKQETLAYLGD 309
Query: 2556 RFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPE 2377
+FR+ AP D+E G+ +++ VL+HL ++ +KF L +M +KL +LV G+C P+
Sbjct: 310 KFRIVFGS--APDVSDIEVGKEVLQRIVLVHLPNNLDKFRMLLFMIRKLYSLVAGDCCPD 367
Query: 2376 TPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFI-LTSAAILKALGNH 2200
PD Q QE + G + +I++E+++ + ++ +++ +R I + +
Sbjct: 368 NPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIKLQIQSDINRGIAINFNDRKYMSRVFLR 427
Query: 2199 TGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEM 2020
I + + YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +HRG+FF E+
Sbjct: 428 INENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAEL 487
Query: 2019 RTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYT 1840
+TT VRKL PE+WGF+CPVHTPDG+PCGLLNH++ C+I T+ SD S VP LA+LG+
Sbjct: 488 KTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCQIATEASDVSQVPVALAQLGVSP 547
Query: 1839 HKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRR 1660
+ A P L V ++G+ +G+ + LR KV + +P E+ V
Sbjct: 548 AHSFAAGP---NLCCVQLDGKVMGWTTHEHGKIVADTLRYWKVEGNHGLPLDLEVGYVPP 604
Query: 1659 STDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVT 1480
ST + QYPG+Y+ R++RP + L ++ + +G FEQVY+ V + P E E +
Sbjct: 605 ST-----KGQYPGLYLFGGHSRMMRPTKYLPLNKTDILGPFEQVYMDVAVTPAEIENNIH 659
Query: 1479 MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQF 1300
H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A + R+DNK+YRLQ
Sbjct: 660 THVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALNHRSDNKLYRLQT 719
Query: 1299 PQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKV 1120
Q P++K Y+ Y MD +P G NA VAVISYTGYDM+DAM INK++ +RGF +GTV KV
Sbjct: 720 GQTPIVKASLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 779
Query: 1119 ERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDEVYYVTFNMET 964
E+++L R R ++ P + + DGLP+ G + + ++
Sbjct: 780 EKVDLSQSRRRGDPITQHFGFGTDEWPESWREKLDADGLPLIGVKVDEGDPIVAYYDDTL 839
Query: 963 GDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGIN 784
G + +H EPAY V+++ GD + I++RI R P+IGDKF+SRHGQKG+
Sbjct: 840 GRTKVKTYHSTEPAYIEEVKLLGDDSGDQEGQQITIKYRITRQPLIGDKFSSRHGQKGVC 899
Query: 783 SFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFN 604
S WP +PFSETG+ PD+I NPH FPSRMTIGM +ES+AGKA A HG DA+P+ F+
Sbjct: 900 SRKWPQVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWKFS 959
Query: 603 EDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVR 424
ED+T + FGE L+KAGYNY+GNE YSG G ++ I+ G VYYQRLRHM+ DKFQVR
Sbjct: 960 EDDTPADFFGEQLSKAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019
Query: 423 ATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRC 244
+TGP++ +T QPV GIR GEMERDA+I HGT+F+LQDRLLNCSD CR C
Sbjct: 1020 STGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTAFLLQDRLLNCSDYTQTSVCRSC 1079
Query: 243 GSLLSVLMS-----------SRAGSHLLKKKRKDDEPLDYTETQRCRTCDK---DDQVFL 106
GSLL+ S R S ++ + E ++ +E + K +
Sbjct: 1080 GSLLNTQTSVPRIGTAASIRCRRCSVKIESYSQQGEYVNESEIWQDGQGKKFVGGENTTT 1139
Query: 105 LQVPRVFRYLTAELAAMNVKIKLGIE 28
+ +P V +YL +ELAAM +K++ +E
Sbjct: 1140 VAIPFVLKYLDSELAAMGIKMRYNVE 1165
>gi|49093218|ref|XP_408070.1| hypothetical protein AN3933.2
[Aspergillus nidulans FGSC A4]
gi|40740052|gb|EAA59242.1| hypothetical protein AN3933.2 [Aspergillus
nidulans FGSC A4]
Length = 1231
Score = 839 bits (2167), Expect = 0.0
Identities = 490/1207 (40%), Positives = 690/1207 (56%), Gaps = 95/1207 (7%)
Frame = -1
Query: 3360 HVDSFDFLVSKGCQFAA---------------------QAVPAEKFRLKNGDAVTMKFTS 3244
HVDSF+ L KG A Q AE R + + ++
Sbjct: 43 HVDSFNALFEKGGIIEAGLKDIGTRTFLDEVVETAEQKQQRLAEGRRAPRRNKLHVRIKE 102
Query: 3243 AQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKV 3064
L KPT+ K T+ + P+ECR+R TY G L+ I+ VN LG+V
Sbjct: 103 VFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNNGDWTEQVRELGQV 162
Query: 3063 PIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKT 2884
PIMLR+ C+L + ELV EE E GGYFIVNG+EK+IR+LI RRN+P+AI+R T
Sbjct: 163 PIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGRRNYPMAIVRNT 222
Query: 2883 FKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALT 2704
F +G +S+FG+ +RSV+ + T+ LHYL+ G + +R+ + +P++ I+KAL
Sbjct: 223 FTNRGHAYSKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYIIPVVMILKALV 282
Query: 2703 DKNDAVISAGFKRGRNQDQFYSSCI---LNMLAQCQEEEILNQEAAIRA-IGSRFRVAVS 2536
+ ND I G + + ++ + + +L + + L+ + RA IG +F+ +
Sbjct: 283 ETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYKAYKLHSRSECRAFIGEKFKPVLG 342
Query: 2535 DRVAPWEDDLEAGRFIIRECVLIHLDS-------DEEKFHTLAYMTQKLIALVKGECAPE 2377
V + EAG +R+ VL HL + D +KF L +M +KL ALV G+CAP+
Sbjct: 343 --VPADTPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPD 400
Query: 2376 TPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSR------------KDFILT 2233
PD QE + G + ++L+ER++ + L S+R +DF+
Sbjct: 401 NPDAVSNQEILLGGFLYGMLLKERLDEWVRSFGPILRDWSNRNHGARFTDPAFERDFV-- 458
Query: 2232 SAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFR 2053
+ +++ + GG M YFL+TGNLV+ GL LQQ SG++V+AE+IN RF+SHFR
Sbjct: 459 -SKVIRRSNENIGG----AMEYFLSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFR 513
Query: 2052 AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNV 1873
IHRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH+ C + T +D S++
Sbjct: 514 MIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLVATSDTDVSHL 573
Query: 1872 PSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARI 1693
P LL +LG+ +V+L +E V ++GR +GY +A I LR KV+ +
Sbjct: 574 PKLLVQLGVRNESSVSL----DESVTVQLDGRIIGYCSPKQARVIASTLRHWKVSGTNNV 629
Query: 1692 PYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVV 1513
P EI V S QYPGIY+ S A R+ RPV+ L +D ++++G FEQ ++ +
Sbjct: 630 PLGLEIGYVPNSNG-----GQYPGIYMFSQAARMYRPVKYLPLDKLDYVGPFEQPFMEIA 684
Query: 1512 LDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHS 1333
P + G++ H E P+ + S N+ PF D+NQSPRN+YQCQM KQTMGT A
Sbjct: 685 CLPSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDY 744
Query: 1332 RADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQ 1153
R DNK+YRLQ Q P+++ Y Y +D +P GTNA VA+ISYTGYDM+DAM INK+S++
Sbjct: 745 RTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHE 804
Query: 1152 RGFAHGTVIKVERINLVTERERKT--------IFYRNPREEIK-----TVGPDGLPIPG- 1015
RGF +GTV K + +L + R+T +F P EI+ T+ DG P G
Sbjct: 805 RGFGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIGA 864
Query: 1014 --RRYFLDEVYYVTFNMETGDFR------TH--KFHYAEPAYCGLVRIVEQGEGDSGAKH 865
+ + Y+ T D TH K+ +E AY +RI+ G A+
Sbjct: 865 EIKEGSIVAAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQA 924
Query: 864 ALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTI 685
+++RI R PIIGDKF+SRHGQKG+ S LWP +PFSE+G+ PD+I NPH FPSRMTI
Sbjct: 925 ISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTI 984
Query: 684 GMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGR 505
MIESMAGKA A HG D +PF F+E+ TA ++FGE L +AGYNYYGNE YSG+ G+
Sbjct: 985 AQMIESMAGKAGALHGHPQDCTPFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGITGK 1044
Query: 504 QMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAII 325
+ IF G+V+YQRLRHM+ DKFQVR TGP++ +T QPV GIR GEMERD++I
Sbjct: 1045 EFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDSLI 1104
Query: 324 AHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMS-SRAGSHLLKKKRKDDEPL----D 160
AHG +++LQDRL+NCSD A+ CR CGS LS ++ S AGS + K+
Sbjct: 1105 AHGAAYILQDRLMNCSDSQRAWICRDCGSFLSTQVAVSSAGSSKARMAAKNSSGSAALGG 1164
Query: 159 YTETQRCRTCDKD----------------------DQVFLLQVPRVFRYLTAELAAMNVK 46
RCR C ++ D V ++ VP V RYL ELAAM ++
Sbjct: 1165 NAGIVRCRRCAREAVFDDSRAVVWEDGEGRRFVGGDNVTVVAVPGVLRYLDVELAAMGIR 1224
Query: 45 IKLGIEH 25
+K +++
Sbjct: 1225 MKFRVDN 1231
>gi|49068918|ref|XP_398748.1| hypothetical protein UM01133.1 [Ustilago
maydis 521]
gi|46096459|gb|EAK81692.1| hypothetical protein UM01133.1 [Ustilago
maydis 521]
Length = 1289
Score = 836 bits (2159), Expect = 0.0
Identities = 471/1156 (40%), Positives = 670/1156 (57%), Gaps = 75/1156 (6%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ +T++ S L KP ++ AK + + P E R+R TY G L + VNG
Sbjct: 142 GNRITLRMDSVNLSKPLINERAKGVRERR-VFPTEARERLFTYTGKLTARLCWSVNGDPE 200
Query: 3093 DIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRR 2914
+ LG P+++RS C+LRGMS +ELV EE E GGYF+VNG+E++IR LI +
Sbjct: 201 QSDIVTLGNCPVLVRSNRCNLRGMSSRELVAHHEEANEFGGYFLVNGNERLIRYLIVAKA 260
Query: 2913 NFPIAIIRKTFKEKGKLFSEFGVMMRSV-KENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
N P AI R +F+++G +S +++R + K++ +V +HYL G + + +R++ +
Sbjct: 261 NSPQAIERPSFEKRGPSYSNKAIVIRCLHKDDLISVTNAVHYLHNGGLTMRFSWRKQEYM 320
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGS 2557
VP++ ++KAL D D I A +G ++ F + + +L ++ + + + +GS
Sbjct: 321 VPVVMVLKALVDATDKEIFASIVQGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGS 380
Query: 2556 RFRVAVSDRVAPWE-DDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAP 2380
+FRV + P + D + G +I +L+HLDS +K+ L +M QKL +LV GE
Sbjct: 381 KFRVVLG---CPEDYTDAQVGTELISRILLVHLDSPRDKYKMLIFMIQKLYSLVAGESCA 437
Query: 2379 ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKL--EYMSSRKDFILTSAAILKALG 2206
+ D+PQ E + G ++ I++ER++ +G +R ++ + K + +K
Sbjct: 438 DNADSPQHHEILMPGFLVGQIIKERIDEAVGNIRAQIARDVRMKVKGLDFFDSKYIKKTV 497
Query: 2205 NHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFM 2026
+ +I +A FLATGNL + GL LQQ SGF+++AE++N R+++HFR++HRGAFF
Sbjct: 498 SKVNIDIGVKIASFLATGNLSSPSGLDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFA 557
Query: 2025 EMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGM 1846
E++TT VRKL PEAWGF+CPVHTPDG+PCGLLNH + +CR+ T D S++ +LL+ LGM
Sbjct: 558 ELKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHFSHTCRMTTRQPDVSHIHALLSGLGM 617
Query: 1845 YTHKTVALAPPG----------EELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDAR 1696
T A+ G + + V ++G LGY A + LR K
Sbjct: 618 -TEAAFAIGAVGAASQRDTDARDNMVVVQLDGAILGYTTPALAKHMATALRIWKTEGLHH 676
Query: 1695 IPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSV 1516
+P EI V S QYPG+Y+ S+ R++RPVR L + ++ +G FEQVYL +
Sbjct: 677 VPLDLEIGFVPTSR-----AGQYPGLYLFSNRARMMRPVRLLHNNKIDMVGPFEQVYLDI 731
Query: 1515 VLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWH 1336
DP+E PGV+ H EL P+ + S NL PF D+NQSPRN YQ QM KQTMGTA A
Sbjct: 732 ACDPQEVVPGVSTHVELAPTSILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVS 791
Query: 1335 SRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASY 1156
R DNK+YR+Q PQ P+++ E Y KY D+YP GTNA VAVISYTGYDMEDAM +NK+++
Sbjct: 792 RRTDNKLYRIQTPQTPVVRPELYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAH 851
Query: 1155 QRGFAHGTVIKVERINLVTERERK-----TIFY-----RNPREEIKTV-GPDGLPIPGRR 1009
+RGF +GTV K E I+L + + T+ + P E + + DGLP G++
Sbjct: 852 ERGFGYGTVYKSETIDLRDLKGKSSSSVPTLHFGFAPNSRPTEAQRAILDQDGLPYIGQK 911
Query: 1008 YFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQ----GEGDSGAKHALIQWRIE 841
E ++ +G KF E AY VR++ G GDS + I RI
Sbjct: 912 VMAGEPICAYWDEVSGKTMFKKFKGDEYAYVDTVRLLGSDAGSGGGDSECQKVQIMLRIT 971
Query: 840 RNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMA 661
R+P+IGDKF+SRHGQKG+ S WP +PFSE+GM PD+I NPH FPSRMTIGM+IES+A
Sbjct: 972 RSPVIGDKFSSRHGQKGVCSQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGMLIESIA 1031
Query: 660 GKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFF 481
GKA A HG D++PF F+ED T FGE L AGYN+ GNE YSG+ G+++ I+
Sbjct: 1032 GKAGAMHGIAQDSTPFTFSEDFTPTEFFGEQLKAAGYNHVGNEPMYSGITGQELRADIYL 1091
Query: 480 GIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVL 301
G+VYYQRLRHM+ DKFQVR TGP+ +T QP+ GIRFGEMERDA++AHGTS++L
Sbjct: 1092 GVVYYQRLRHMVNDKFQVRTTGPVHALTRQPIKGRKRAGGIRFGEMERDALLAHGTSYML 1151
Query: 300 QDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSH-------LLKKKRKDDEPLDYTETQR 142
QDRL+NCSD +Y CR CGSLLSV + A S + + P+ +
Sbjct: 1152 QDRLMNCSDYSTSYVCRTCGSLLSVGFDTSASSRHGGGAISTIDVTTQGTTPILGPNGEF 1211
Query: 141 CRTCDKDDQV---------------------------------------FLLQVPRVFRY 79
CR C +D+V ++ VP V +Y
Sbjct: 1212 CRVCRAEDEVRHQQGLEPLRGKRQPIGGVEATIAIPQSNVINSLSGGDLDVVAVPYVLKY 1271
Query: 78 LTAELAAMNVKIKLGI 31
L AELAAM +K+ G+
Sbjct: 1272 LVAELAAMGIKMSFGV 1287
>gi|50303741|ref|XP_451816.1| unnamed protein product [Kluyveromyces
lactis]
gi|49640948|emb|CAH02209.1| unnamed protein product [Kluyveromyces
lactis NRRL Y-1140]
Length = 1203
Score = 834 bits (2154), Expect = 0.0
Identities = 464/1131 (41%), Positives = 677/1131 (59%), Gaps = 49/1131 (4%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ +++ + KPT + G + + P+E RQR +Y G + + + VN
Sbjct: 92 GNKLSLSIEQVSISKPTSNDGVSSAVER-KVFPSESRQRLTSYRGKILLKLKWSVNDGEE 150
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
E+ G +PIML+S CHL MS ELV EE E GGYFIVNG EK+IR+LI R
Sbjct: 151 TFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQR 210
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +S++G+ +RSV+ + T+ LHYL+ G + +R+ +
Sbjct: 211 RNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL 270
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEE--EILNQEAAIRAI 2563
+P++ I++AL D ND I G + F + + +L ++ + N++ ++ +
Sbjct: 271 IPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYL 330
Query: 2562 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL-DSDEEKFHTLAYMTQKLIALVKGEC 2386
G +FRV + +P DL+ G+ ++ VL+HL +++++KF+ L +M +KL +LV GEC
Sbjct: 331 GDKFRVVF--QASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGEC 388
Query: 2385 APETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSR------KDFILTSAA 2224
+P+ PD Q QE + G + +I++E++E + +R +++ +R KD +
Sbjct: 389 SPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKV 448
Query: 2223 ILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIH 2044
+++ N I + YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +H
Sbjct: 449 LMRVNEN-----IGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVH 503
Query: 2043 RGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSL 1864
RG+FF +++TT VRKL PE+WGF CPVHTPDG+PCGLLNH++ C+I T+ SD S +PS+
Sbjct: 504 RGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSI 563
Query: 1863 LAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKV-AKDARIPY 1687
L LG+ V A P + V ++G+ +G+ + + LR KV K +P
Sbjct: 564 LYSLGVTPAAHVIAAGPS--MCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPV 621
Query: 1686 TSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLD 1507
E+ V +T QYPG+++ R++RPVR L +D + +G FEQVY+++ +
Sbjct: 622 DLEVGYVPPTTS-----GQYPGLFLFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVT 676
Query: 1506 PEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRA 1327
PEE E V H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A R+
Sbjct: 677 PEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 736
Query: 1326 DNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRG 1147
DNK+YRLQ Q P++K Y+ Y MD +P GTNA VAVISYTGYDM+DAM INK++ +RG
Sbjct: 737 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERG 796
Query: 1146 FAHGTVIKVERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDEV 991
F +GT+ KVE++NL R R ++ P+E ++ + DGLP+ G +
Sbjct: 797 FGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDP 856
Query: 990 YYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQ-----WRIERNPII 826
F+ + +H +EPAY V+++ GD +K +Q +RI R P I
Sbjct: 857 ICAYFDDTLNKTKIKTYHSSEPAYIEEVKLI----GDESSKFQELQAITIKYRIRRTPQI 912
Query: 825 GDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAA 646
GDKF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIGM +ES+AGKA A
Sbjct: 913 GDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGA 972
Query: 645 THGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYY 466
HG D++P+ FNE +T ++FG+ L KAGYNY+GNE YSG G ++ I+ G+VYY
Sbjct: 973 LHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYY 1032
Query: 465 QRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLL 286
QRLRHM+ DKFQVR+TGP++ +T QPV GIR GEMERDA+I HGTSF+LQDRLL
Sbjct: 1033 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLL 1092
Query: 285 NCSDRDVAYACRRCGSLLSVLMS-SRAGS-----------------HLLKKKRKDDEPLD 160
NCSD CR CG++L+ S + GS L+ K EP+
Sbjct: 1093 NCSDYTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVH 1152
Query: 159 YTETQRCRTCDKDDQVFL-------LQVPRVFRYLTAELAAMNVKIKLGIE 28
+++ D F+ + +P V +YL +ELAAM ++++ +E
Sbjct: 1153 IADSEIWE--DGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVE 1201
>gi|6325267|ref|NP_015335.1| RNA polymerase I subunit A135; Rpa135p
[Saccharomyces cerevisiae]
gi|133320|sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I 135 kDa
polypeptide (A135) (RNA polymerase I subunit 2)
gi|101446|pir||A39607 DNA-directed RNA polymerase (EC 2.7.7.6) I 135K
chain - yeast (Saccharomyces cerevisiae)
gi|172464|gb|AAA34993.1| RNA polymerase I (second largest subunit)
gi|887587|emb|CAA90154.1| Rpa2p [Saccharomyces cerevisiae]
gi|939744|gb|AAA97589.1| Rpa135p
gi|1314085|emb|CAA95050.1| Rpa2p [Saccharomyces cerevisiae]
Length = 1203
Score = 833 bits (2153), Expect = 0.0
Identities = 475/1129 (42%), Positives = 669/1129 (59%), Gaps = 47/1129 (4%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ +++ + KP + G + + P+E RQR +Y G L + + VN
Sbjct: 92 GNKLSVSVEQVSIAKPMSNDGVSSAVER-KVYPSESRQRLTSYRGKLLLKLKWSVNNGEE 150
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
++ E+ G +P+ML+S CHL MS ELV EE E GGYFIVNG EK+IR+LI R
Sbjct: 151 NLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQR 210
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +S +G+ +RSV+ + T+ LHYL+ G + +R+ +
Sbjct: 211 RNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL 270
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEE--EILNQEAAIRAI 2563
VP++ I+KAL +D I G +D F + + +L ++ + N+ ++ +
Sbjct: 271 VPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYL 330
Query: 2562 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL--DSDEEKFHTLAYMTQKLIALVKGE 2389
G +FRV + +P + DLE G+ ++ VL+HL D ++KF L +M +KL +LV GE
Sbjct: 331 GDKFRVVF--QASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGE 388
Query: 2388 CAPETPDNPQFQEASVSGHILLLILRER----MENIIGMVRRKLE--YMSSRKDFILTSA 2227
C+P+ PD Q QE + G + +IL+E+ ++NII VR + + KD S
Sbjct: 389 CSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSR 448
Query: 2226 AILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAI 2047
+++ N I M YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +
Sbjct: 449 VLMRVNEN-----IGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV 503
Query: 2046 HRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPS 1867
HRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH CRI T SD S +PS
Sbjct: 504 HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPS 563
Query: 1866 LLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKV-AKDARIP 1690
+L LG+ A P L V ++G+ +G+V + I LR KV K +P
Sbjct: 564 ILYSLGVAPASHTFAAGPS--LCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLP 621
Query: 1689 YTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVL 1510
EI V ST + QYPG+Y+ R++RPVR L +D + +G FEQVY+++ +
Sbjct: 622 IDLEIGYVPPST-----RGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAV 676
Query: 1509 DPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSR 1330
P+E + V H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A R
Sbjct: 677 TPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHR 736
Query: 1329 ADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQR 1150
+DNK+YRLQ Q P++K Y+ Y MD +P G NA VAVISYTGYDM+DAM INK++ +R
Sbjct: 737 SDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADER 796
Query: 1149 GFAHGTVIKVERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDE 994
GF +GT+ K E+++L R R ++ P+E ++ + DGLP G +
Sbjct: 797 GFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGD 856
Query: 993 VYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQ-----WRIERNPI 829
F+ + +H +EPAY V ++ GD K +Q +RI R P
Sbjct: 857 PICAYFDDTLNKTKIKTYHSSEPAYIEEVNLI----GDESNKFQELQTVSIKYRIRRTPQ 912
Query: 828 IGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAA 649
IGDKF+SRHGQKG+ S WP +PFSETG+ PDII NPH FPSRMTIGM +ES+AGKA
Sbjct: 913 IGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAG 972
Query: 648 ATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVY 469
A HG D++P++FNED+T ++FGE L KAGYNY+GNE YSG G ++ I+ G+VY
Sbjct: 973 ALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVY 1032
Query: 468 YQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRL 289
YQRLRHM+ DKFQVR+TGP++ +T QPV GIR GEMERDA+I HGTSF+LQDRL
Sbjct: 1033 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1092
Query: 288 LNCSDRDVAYACRRCGSLLSVLMS-SRAGS----------------HLLKKKRKDDEPLD 160
LN SD A CR CGS+L+ S R GS L K +D E +
Sbjct: 1093 LNSSDYTQASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIF 1152
Query: 159 YTETQRCRTCDKD-----DQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 28
++Q + ++ + +P V +YL +EL+AM ++++ +E
Sbjct: 1153 IDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201
>gi|50290705|ref|XP_447785.1| unnamed protein product [Candida
glabrata]
gi|49527096|emb|CAG60734.1| unnamed protein product [Candida glabrata
CBS138]
Length = 1202
Score = 827 bits (2135), Expect = 0.0
Identities = 467/1135 (41%), Positives = 672/1135 (59%), Gaps = 53/1135 (4%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ +++ + KPT + G ++ P+ P+E RQR +Y G + + + VN
Sbjct: 89 GNKLSISVEQVSIAKPTANDGVMGAAER-PVYPSEARQRLTSYRGKILLKLKWSVNDGEN 147
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
E+ G +PIML+S CHL MS ELV EE E GGYFI+NG EK+IR+LI R
Sbjct: 148 VFSEVRDCGGLPIMLQSNRCHLNKMSPHELVQHKEESDELGGYFIINGIEKLIRMLIVQR 207
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +S++G+ +RSV+ + T+ LHYL+ G + +R+ +
Sbjct: 208 RNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL 267
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEE--EILNQEAAIRAI 2563
+P++ I+KAL D +D I G + F + + +L ++ ++ N+ ++ +
Sbjct: 268 IPVVMIMKALVDTSDREIFDGIIGSNTNNSFLTDRLELLLRGFKKRYPQLKNRTQVLQYL 327
Query: 2562 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDE--EKFHTLAYMTQKLIALVKGE 2389
G +FR+ + +P + D E G+ ++ VL+HL S+ +KF L +M +KL +LV GE
Sbjct: 328 GDKFRLVF--QASPDKSDYEVGQEVLNRIVLVHLGSNGNMDKFRMLLFMVRKLYSLVAGE 385
Query: 2388 CAPETPDNPQFQEASVSGHILLLILRER----MENIIGMVR----RKLEYMSSRKDFILT 2233
C P+ PD Q QE + G + +IL+E+ ++ I+ VR R + + K ++
Sbjct: 386 CCPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQGIVAQVRTDINRGVAINFNEKKYM-- 443
Query: 2232 SAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFR 2053
+ +L + ++ G + M YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR
Sbjct: 444 -SRVLMRVNDNIGSK----MQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR 498
Query: 2052 AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNV 1873
+HRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH CRI T SD S V
Sbjct: 499 MVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTTQSDVSKV 558
Query: 1872 PSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDAR- 1696
P LL LG+ A P L V ++G+ +G+ + I LR KV +
Sbjct: 559 PELLYSLGVTPASHTFAAGPS--LCCVQLDGKIIGWTSHEQGRVIADTLRFWKVEGETPG 616
Query: 1695 IPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSV 1516
+P EI V S+ + QYPG+YI R++RPVR L +D + +G FEQVY+++
Sbjct: 617 LPKDLEIGYVPPSS-----KGQYPGLYIFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNI 671
Query: 1515 VLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWH 1336
+ P+E + + H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A
Sbjct: 672 AVTPQEIQNNIHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALC 731
Query: 1335 SRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASY 1156
R+DNK+YRLQ Q P++K Y+ Y MD +P GTNA VAVISYTGYDM+DAM INK++
Sbjct: 732 HRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSAD 791
Query: 1155 QRGFAHGTVIKVERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFL 1000
+RGF +GT+ KVE+++L R R ++ P+E + + DGLP G
Sbjct: 792 ERGFGYGTMYKVEKVDLSLNRSRGDPVTQHFGFGTDEWPKEWLDKLDEDGLPYIGTYVEE 851
Query: 999 DEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQ-----WRIERN 835
+ F+ G + +H +EPAY V ++ GD K +Q +RI R
Sbjct: 852 GDPICAYFDDTIGKTKIKTYHSSEPAYIEEVNLI----GDESNKFQELQTVSIKYRIRRT 907
Query: 834 PIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGK 655
P IGDKF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIGM +ES+AGK
Sbjct: 908 PQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGK 967
Query: 654 AAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGI 475
A A HG D++P++FNE +T ++FGE L KAGYNY+GNE YSG G ++ I+ G+
Sbjct: 968 AGALHGIAQDSTPWIFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGV 1027
Query: 474 VYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQD 295
VYYQRLRHM+ DKFQVR+TGP++ +T QPV GIR GEMERDA+I HGTSF+LQD
Sbjct: 1028 VYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQD 1087
Query: 294 RLLNCSDRDVAYACRRCGSLLSVLMS-------------------SRAGSHLLKKKRKDD 172
RLLN SD A CR CGS+L+ + A L + + K +
Sbjct: 1088 RLLNSSDYTQAAICRECGSILTTQQTVPRIGAVSSVCCRRCAVKFEDAKKTLFEHEEKTE 1147
Query: 171 EPLDYTETQRCRTCDKDDQVFL-------LQVPRVFRYLTAELAAMNVKIKLGIE 28
E + ++Q D Q F+ + +P V +YL +EL+AM ++++ ++
Sbjct: 1148 EKIFIDDSQIWE--DGQGQKFVGGNDTTTVAIPFVLKYLDSELSAMGIRLRYNVD 1200
>gi|32418524|ref|XP_329740.1| DNA-DIRECTED RNA POLYMERASE I
POLYPEPTIDE 2 (RNA POLYMERASE I SUBUNIT 2) [Neurospora
crassa]
gi|28926619|gb|EAA35588.1| DNA-DIRECTED RNA POLYMERASE I POLYPEPTIDE
2 (RNA POLYMERASE I SUBUNIT 2) [Neurospora crassa]
Length = 1234
Score = 821 bits (2121), Expect = 0.0
Identities = 469/1151 (40%), Positives = 665/1151 (57%), Gaps = 67/1151 (5%)
Frame = -1
Query: 3264 VTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII 3085
+T+++ S +L K + + + + PAECR+R ++Y G L + +N
Sbjct: 90 LTIRYKSIELQKSQVPPTNRWAKNR-EIFPAECRERHVSYRGKLSATFEYRINDGEPHEF 148
Query: 3084 EIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFP 2905
LG++PIM++S CHL+ S +LV EE E GGYFIVNG EK+IR+L+ NRRNFP
Sbjct: 149 VRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFP 208
Query: 2904 IAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLM 2725
+AI+R +F+ +G ++ +G++MRSV+ + T+ LHYL G + +R+ + +P+M
Sbjct: 209 LAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVM 268
Query: 2724 YIVKALTDKNDAVISAGFKRGRNQDQFYSSCILN----MLAQCQEEEILNQEAAIRA-IG 2560
I+KAL + ND I G G Q + ++ L +L + ++ L + RA +G
Sbjct: 269 MIMKALVETNDREIFEGLV-GPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLG 327
Query: 2559 SRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDS-------DEEKFHTLAYMTQKLIAL 2401
+FRV + V D E G +R+ VL+HL S D +KF+ L +M +KL AL
Sbjct: 328 QKFRVVLG--VPDTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYAL 385
Query: 2400 VKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKL--EYMSSRKDFILTSA 2227
V G+CA + PD Q QE + G + I++ER+E ++ + R +Y+ S
Sbjct: 386 VAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSD 445
Query: 2226 AILK----ALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSH 2059
LK A+ I + + YFL+TGNLV+ GL LQQ SGF+V+AE++N LRF+SH
Sbjct: 446 TFLKDFPIAIFRRANENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISH 505
Query: 2058 FRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNS 1879
FR +HRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH+ C+I+T+ D S
Sbjct: 506 FRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDAS 565
Query: 1878 NVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDA 1699
+ L ELG+ + A + E V+++GR +G+ + SI LR KV +
Sbjct: 566 TISRLAFELGVVNISSAATS----ESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGEN 621
Query: 1698 RIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLS 1519
+P EI V S YPG+Y+ S R++RPV+ L + + +G EQ Y+S
Sbjct: 622 GVPLQLEIGYVPPSNG-----GSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQEQPYMS 676
Query: 1518 VVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAW 1339
+ +E PG + H E P+ + S N+ PF D NQSPRN+YQCQMGKQTMGT A
Sbjct: 677 IACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATAL 736
Query: 1338 HSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKAS 1159
R DNKMYRLQ Q P+++ + Y D +P G NA VAVISYTGYDM+DAM +NK++
Sbjct: 737 AHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSA 796
Query: 1158 YQRGFAHGTVIKVERINLVTE---RERKTI---FYRNPREEIKT-----VGPDGLPIPGR 1012
++RGF HG++ K ++++L + R K+I F P I+ + DGLP GR
Sbjct: 797 HERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGR 856
Query: 1011 RYFLDEVYYVTFNMETG--------DFRTHKFHY--AEPAYCGLVRIVEQGEGDSGAKHA 862
+V + D TH Y +E A+ VR++ G +
Sbjct: 857 LLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTV 916
Query: 861 LIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIG 682
I+ RI R+P+IGDKF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIG
Sbjct: 917 SIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIG 976
Query: 681 MMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQ 502
M +ES+AGKA A HG D++PF F+E NTA ++FG L KAGYNY+GNE YSG+ G +
Sbjct: 977 MFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEE 1036
Query: 501 MEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIA 322
+ I+ G+VYYQRLRHM+ DK+QVR TGP+ P T QP+ GIR GEMERDA++A
Sbjct: 1037 FQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLA 1096
Query: 321 HGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQR 142
HGTSF+LQDRLLNCSD ++ CR+CGS LS + S + K++ T R
Sbjct: 1097 HGTSFLLQDRLLNCSDYSKSWMCRQCGSFLS---TQPTVSPFIGKRKA-------VSTVR 1146
Query: 141 CRTC----DKDDQVFLLQ------------------------VPRVFRYLTAELAAMNVK 46
CR C D + V L+Q VP +YL ELAAM +K
Sbjct: 1147 CRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVELAAMGIK 1206
Query: 45 IKLGIEHPSKV 13
+K ++ ++
Sbjct: 1207 LKYKVDKKDEI 1217
>gi|14285745|sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I
polypeptide 2 (RNA polymerase I subunit 2)
gi|7493960|pir||T30515 DNA-directed RNA polymerase (EC 2.7.7.6) I
135K chain - Neurospora crassa
gi|3668171|dbj|BAA33445.1| RNA polymerase I second-largest subunit
[Neurospora crassa]
Length = 1234
Score = 819 bits (2115), Expect = 0.0
Identities = 469/1151 (40%), Positives = 664/1151 (56%), Gaps = 67/1151 (5%)
Frame = -1
Query: 3264 VTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII 3085
+T+++ S +L K + + + + PAECR+R ++Y G L + +N
Sbjct: 90 LTIRYKSIELQKSQVPPTNRWAKNR-EIFPAECRERHVSYRGKLSATFEYRINDGEPHEF 148
Query: 3084 EIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFP 2905
LG++PIM++S CHL+ S +LV EE E GGYFIVNG EK+IR+L+ NRRNFP
Sbjct: 149 VRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFP 208
Query: 2904 IAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLM 2725
+AI+R +F+ +G ++ +G++MRSV+ + T+ LHYL G + +R+ + +P+M
Sbjct: 209 LAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVM 268
Query: 2724 YIVKALTDKNDAVISAGFKRGRNQDQFYSSCILN----MLAQCQEEEILNQEAAIRA-IG 2560
I+KAL + ND I G G Q + + L +L + ++ L + RA +G
Sbjct: 269 MIMKALVETNDREIFEGLV-GPPQSKASPTPSLTDRVELLLRTYKKYGLYSKTQTRAYLG 327
Query: 2559 SRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDS-------DEEKFHTLAYMTQKLIAL 2401
+FRV + V D E G +R+ VL+HL S D +KF+ L +M +KL AL
Sbjct: 328 QKFRVVLG--VPDTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYAL 385
Query: 2400 VKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKL--EYMSSRKDFILTSA 2227
V G+CA + PD Q QE + G + I++ER+E ++ + R +Y+ S
Sbjct: 386 VAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSD 445
Query: 2226 AILK----ALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSH 2059
LK A+ I + + YFL+TGNLV+ GL LQQ SGF+V+AE++N LRF+SH
Sbjct: 446 TFLKDFPIAIFRRANENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISH 505
Query: 2058 FRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNS 1879
FR +HRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH+ C+I+T+ D S
Sbjct: 506 FRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDAS 565
Query: 1878 NVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDA 1699
+ L ELG+ + A + E V+++GR +G+ + SI LR KV +
Sbjct: 566 TISRLAFELGVVNISSAATS----ESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGEN 621
Query: 1698 RIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLS 1519
+P EI V S YPG+Y+ S R++RPV+ L + + +G EQ Y+S
Sbjct: 622 GVPLQLEIGYVPPSNG-----GSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQEQPYMS 676
Query: 1518 VVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAW 1339
+ +E PG + H E P+ + S N+ PF D NQSPRN+YQCQMGKQTMGT A
Sbjct: 677 IACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATAL 736
Query: 1338 HSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKAS 1159
R DNKMYRLQ Q P+++ + Y D +P G NA VAVISYTGYDM+DAM +NK++
Sbjct: 737 AHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSA 796
Query: 1158 YQRGFAHGTVIKVERINLVTE---RERKTI---FYRNPREEIKT-----VGPDGLPIPGR 1012
++RGF HG++ K ++++L + R K+I F P I+ + DGLP GR
Sbjct: 797 HERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGR 856
Query: 1011 RYFLDEVYYVTFNMETG--------DFRTHKFHY--AEPAYCGLVRIVEQGEGDSGAKHA 862
+V + D TH Y +E A+ VR++ G +
Sbjct: 857 LLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTV 916
Query: 861 LIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIG 682
I+ RI R+P+IGDKF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIG
Sbjct: 917 SIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIG 976
Query: 681 MMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQ 502
M +ES+AGKA A HG D++PF F+E NTA ++FG L KAGYNY+GNE YSG+ G +
Sbjct: 977 MFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITGEE 1036
Query: 501 MEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIA 322
+ I+ G+VYYQRLRHM+ DK+QVR TGP+ P T QP+ GIR GEMERDA++A
Sbjct: 1037 FQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDALLA 1096
Query: 321 HGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQR 142
HGTSF+LQDRLLNCSD ++ CR+CGS LS + S + K++ T R
Sbjct: 1097 HGTSFLLQDRLLNCSDYSKSWMCRQCGSFLS---TQPTVSPFIGKRKA-------VSTVR 1146
Query: 141 CRTC----DKDDQVFLLQ------------------------VPRVFRYLTAELAAMNVK 46
CR C D + V L+Q VP +YL ELAAM +K
Sbjct: 1147 CRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVELAAMGIK 1206
Query: 45 IKLGIEHPSKV 13
+K ++ ++
Sbjct: 1207 LKYKVDKKDEI 1217
>gi|38110159|gb|EAA55921.1| hypothetical protein MG01572.4
[Magnaporthe grisea 70-15]
Length = 1192
Score = 803 bits (2075), Expect = 0.0
Identities = 456/1085 (42%), Positives = 638/1085 (58%), Gaps = 69/1085 (6%)
Frame = -1
Query: 3075 LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAI 2896
+G++PIM++S CHL G S LV EE E GGYFIVNG+EK+IRLL+ NRRNFP+AI
Sbjct: 101 IGQMPIMVKSNRCHLEGNSPALLVQRKEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAI 160
Query: 2895 IRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIV 2716
R +F+ +G ++ +G+++RSV+ + T+ LHYL+ G + +R+ + VP+M I+
Sbjct: 161 NRPSFQNRGPAYTPYGIILRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMIL 220
Query: 2715 KALTDKNDAVISAGF---KRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRA-IGSRFR 2548
KAL + ND+ I G + + + + +L + + L + RA +G +FR
Sbjct: 221 KALVETNDSEIFEGLCGPPGSKGVGNSFLTDRVELLLRTYKSYGLYSKTKTRAYLGEKFR 280
Query: 2547 VAVSDRVAPWEDDLEAGRFIIRECVLIHLDS-------DEEKFHTLAYMTQKLIALVKGE 2389
V + V + G +++ VL+HL S D +KF + M +KL ALV GE
Sbjct: 281 VVLG--VQDSMSHYDVGTEFLKKIVLVHLGSHDVTEQEDADKFRMILVMMRKLYALVAGE 338
Query: 2388 CAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKL--EYMSSRKDFILTSAAILK 2215
CA + PD Q QE + G++ +IL+ER+E + + R +Y+ TSAA K
Sbjct: 339 CAVDNPDAVQNQEILLGGYLYGMILKERLEEFVAVSLRAALRDYLRRSPANTFTSAAFEK 398
Query: 2214 A----LGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAI 2047
+ T + + YFL+TGNL + GL LQQ SGF V+AE++N LRF+SHFR +
Sbjct: 399 DFPANIFRRTNENLGNSLEYFLSTGNLQSPSGLDLQQTSGFVVVAEKLNFLRFISHFRMV 458
Query: 2046 HRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPS 1867
HRG+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH+ C+I+TD D S +P
Sbjct: 459 HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTDAVDVSAIPR 518
Query: 1866 LLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPY 1687
L ELG+ + EE PV+++G+ LG+ ++ +I LR KV +P
Sbjct: 519 LATELGVVDTSSADT----EESVPVMLDGKILGWCSPKQSRTIADTLRYWKVEGSHGVPV 574
Query: 1686 TSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLD 1507
EI LV S YPGIY+ S R++RPV+ L ++ +++GT EQ Y+S+
Sbjct: 575 HMEIGLVPPSNG-----GSYPGIYMASQPSRMVRPVKYLPLEKEDYVGTHEQPYMSIACT 629
Query: 1506 PEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRA 1327
E G + H E P+ + S N+ PF D NQSPRN+YQCQMGKQTMGT A R
Sbjct: 630 EPEIVSGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAISRRT 689
Query: 1326 DNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRG 1147
DNKMYR+Q Q P+++ + +Y D +P G NA VAVISYTGYDM+DAM INK++++RG
Sbjct: 690 DNKMYRIQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERG 749
Query: 1146 FAHGTVIKVERINLVTE-RERKT-----IFYRNPREEIKT-----VGPDGLPIPGRRYFL 1000
F HGT+ K ++I L + R R T +F P +K + DGLP G +
Sbjct: 750 FGHGTIYKTKKITLKDDSRTRSTKHITKMFGFAPNTTVKARDLEKLDLDGLPRIGSKVEQ 809
Query: 999 DEVYYVTFNMETG--------DFRTH--KFHYAEPAYCGLVRIVEQGEGDSGAKHALIQW 850
++ + D TH K+ +E A+ +R+V G + I++
Sbjct: 810 GDIIAAWHTVSADYSDQLVNRDGLTHYEKYKDSETAFVEEIRLVGNENGTEPLQTVSIKF 869
Query: 849 RIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIE 670
RI R+P+IGDKF+SRHGQKG+ S WP+ +PFSE+GM PD+I NPH FPSRMTIGM +E
Sbjct: 870 RIPRSPVIGDKFSSRHGQKGVASQKWPMIDMPFSESGMQPDVIINPHAFPSRMTIGMFVE 929
Query: 669 SMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQ 490
S+AGK+ A HG D++PF F+E NTA ++FG L KAGYNY+GNE YSG+ G+++
Sbjct: 930 SLAGKSGALHGLAQDSTPFKFDEQNTAADYFGHQLMKAGYNYHGNEPMYSGITGQELAAD 989
Query: 489 IFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTS 310
I+ G+VYYQRLRHM+ DKFQVR TGP+ P T QP+ GIR GEMERDA++AHGT+
Sbjct: 990 IYIGVVYYQRLRHMVNDKFQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERDALLAHGTA 1049
Query: 309 FVLQDRLLNCSDRDVAYACRRCGSLLSV--LMSSRAGSHLLKKKRKDDEPLDYTETQRCR 136
F+LQDRLLNCSD ++ CR CG+ LSV +S G KRK T RCR
Sbjct: 1050 FLLQDRLLNCSDYTRSWICRTCGTFLSVQPTVSPFVG------KRK-------VNTVRCR 1096
Query: 135 TC-------DKD----------------------DQVFLLQVPRVFRYLTAELAAMNVKI 43
+C D+D D ++ VP ++L ELAAM VK+
Sbjct: 1097 SCAQRLDRLDEDVDLATLEGEIWEDGQGNQWIGGDNTTVVVVPGALKFLDVELAAMGVKL 1156
Query: 42 KLGIE 28
K ++
Sbjct: 1157 KYRVD 1161
>gi|1350832|sp|P28365|RPA2_EUPOC DNA-DIRECTED RNA POLYMERASE I SECOND
LARGEST SUBUNIT (RNA POLYMERASE I SUBUNIT 2)
gi|2133436|pir||S70413 DNA-directed RNA polymerase (EC 2.7.7.6) I
second largest chain RPA2 - Euplotes octocarinatus
gi|578407|emb|CAA47067.1| DNA-directed RNA polymerase [Euplotes
octocarinatus]
Length = 1166
Score = 801 bits (2068), Expect = 0.0
Identities = 465/1160 (40%), Positives = 668/1160 (57%), Gaps = 45/1160 (3%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDA------VTMKFTSAQLHKPTLDT 3214
+IA +H+DSFDF +S A + + + + A +T+ + S +L +P+L
Sbjct: 18 NIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSL-- 75
Query: 3213 GAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCH 3034
++ D+ L P+ECRQR +TY L I + +D ++ LG +P M R + C+
Sbjct: 76 -GEIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCN 134
Query: 3033 LRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSE 2854
L+G+++KEL GE+ +E GGYFIVNG+EKVIR+LI +RNFPIA R F E+GK F++
Sbjct: 135 LKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 2853 FGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAG 2674
+GV MR V+++ TA +TL YL G++ L L ++++ F +P++ I+KAL + D I
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 2673 FKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGR 2494
+G + S + +LA ++ I + + + IGSRFR+ ++ + D++AG
Sbjct: 255 IVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAG-ITSETSDIDAGD 313
Query: 2493 FIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLIL 2314
+ + + IH DS E KF TL M KL A V E + D+ Q+ + GH+ L IL
Sbjct: 314 LFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQIL 373
Query: 2313 RERMENIIGM-VRRKLEYMSSRKDF-------ILTSAAILKALGNHTGGEITRGMAYFLA 2158
E++ + + + +R +L R +F +LT+ I N G I + M FLA
Sbjct: 374 SEKLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKI-----NCGIGLIGKRMENFLA 428
Query: 2157 TGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWG 1978
TGNL++R L L Q SGF +I +++N +RF+SHFR+IHRG +F E +TT VRKL PE+WG
Sbjct: 429 TGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWG 488
Query: 1977 FICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVP---SLLAELGMYTHKTVALAPPGE 1807
FICPVHTPDGAPCGLLNH++ SC + ++ ++L ELGM + +
Sbjct: 489 FICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHT 548
Query: 1806 ELYPVLMNGRFLGYVPITKAASIE---RYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQ 1636
YPV+ +G LGYV S RYL+C + D IP T EIA + S +N+Q
Sbjct: 549 GYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQ 608
Query: 1635 TQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPS 1456
+PGI++ S R RPV+NL + +E I EQ+ LS+ E+ P T HQEL P
Sbjct: 609 --WPGIFLASTPARFTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPETT-HQELDPI 665
Query: 1455 CLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKL 1276
+ S ++ F ++NQSPRN+YQCQM KQTMGT H R DNK+YRL FP +P++K
Sbjct: 666 NILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKT 725
Query: 1275 EAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTE 1096
++++EYP GTNA VAVISYTGYD+EDAM INK+SY+RGF HG V K +L
Sbjct: 726 RTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNES 785
Query: 1095 RERKTI---------FYRNPREEIKT------VGPDGLPIPGRRYFLDEVYYVTFNMETG 961
+ T F N ++ K+ + PDGLP G + + F+
Sbjct: 786 NSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKR 845
Query: 960 DFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQW--RIERNPIIGDKFASRHGQKGI 787
+ KF +E A VR+ G D + I + R R P+IGDKF+SRHGQKG+
Sbjct: 846 GAKLSKFKDSEKARIETVRVC--GNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGV 903
Query: 786 NSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVF 607
S LWP +PF+E G+ PD+I NPH FPSRMT+GM+I+SMA K+ + GE F
Sbjct: 904 LSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQR 963
Query: 606 NEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQV 427
+DN + HFG+ L G+NY+GNE YSG+ G ++ IF G+VYYQRLRHM++DK Q
Sbjct: 964 YDDNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQA 1023
Query: 426 RATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRR 247
R TGPID +THQPV GIRFGEMERD+++AHG ++ L DRL SD + C+
Sbjct: 1024 RGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQN 1083
Query: 246 CGSLLS------VLMSSRAGSHLLKKKRKD--DEPLDYTETQRCRTCDKDDQVFLLQVPR 91
CGS+LS ++ + L + KD D+ + E C+ C K+ + +P
Sbjct: 1084 CGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPF 1143
Query: 90 VFRYLTAELAAMNVKIKLGI 31
V R+L ELA+M +K+K +
Sbjct: 1144 VLRFLANELASMGIKLKFTV 1163
>gi|45185258|ref|NP_982975.1| ABR029Wp [Eremothecium gossypii]
gi|44980916|gb|AAS50799.1| ABR029Wp [Eremothecium gossypii]
Length = 1198
Score = 791 bits (2043), Expect = 0.0
Identities = 457/1128 (40%), Positives = 666/1128 (58%), Gaps = 46/1128 (4%)
Frame = -1
Query: 3273 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 3094
G+ + + T L KP + G ++ + PAE R+R TY G L + ++ VN
Sbjct: 86 GNKLALSVTQVSLTKPMSNDGVTAAAER-NVFPAEARKRLTTYRGKLLLKLNWSVNDGEE 144
Query: 3093 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 2917
E+ G +P+ML+S CHL MS +ELV EE E GGYFIVNG EK+IR+LI R
Sbjct: 145 TFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRMLIVQR 204
Query: 2916 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 2737
RN P+AIIR +F +G +S +GV +R V+ + T+ LHYL+ G + +R+ +
Sbjct: 205 RNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL 264
Query: 2736 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEE--EILNQEAAIRAI 2563
VP++ I+KALTD +D I G + F + + +L ++ ++LN+ ++ +
Sbjct: 265 VPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYL 324
Query: 2562 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL-DSDEEKFHTLAYMTQKLIALVKGEC 2386
G +FRV + + +P D G+ ++R VL+HL D + +K + L +M +KL +LV GEC
Sbjct: 325 GDKFRVVL--QASPDMSDYLVGQELLRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGEC 382
Query: 2385 APETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRK---DFILTS--AAI 2221
P+ PD Q QE + G + +I++E++E + ++ +++ +R DF +
Sbjct: 383 CPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVNRGMPVDFKDRKYMTRV 442
Query: 2220 LKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHR 2041
L + + G ++ YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +HR
Sbjct: 443 LTRINENIGSKLQ----YFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHR 498
Query: 2040 GAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLL 1861
G+FF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH C+I T SD S +P+LL
Sbjct: 499 GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKISTTQSDVSKIPTLL 558
Query: 1860 AELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKV-AKDARIPYT 1684
LG+ V A P L V ++G+ +G+ + + LR KV K +P
Sbjct: 559 YSLGVSPAAHVTAAGPS--LCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLD 616
Query: 1683 SEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDP 1504
EI V S + QYPG+Y+ R++RPVR L +D + +G FEQVY+ + + P
Sbjct: 617 LEIGYVPASK-----RGQYPGLYLFGGHSRMMRPVRYLPLDKQDIVGPFEQVYMDIAVTP 671
Query: 1503 EEAEPGVT--MHQELHPSCLFSFAGNLIPFP-DHNQSPRNVYQCQMGKQTMGTAVHAWHS 1333
EE P +T + H + S NL PF P+ QMGKQTMGT A
Sbjct: 672 EE-NPLITSILMLNFHQQIILSILANLTPFLLTLTNLPKICTNYQMGKQTMGTPGVALCH 730
Query: 1332 RADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQ 1153
R+DNK+YRLQ Q P++K Y+ Y MD +P GTNA VAVISYTGYDM+DAM INK++ +
Sbjct: 731 RSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADE 790
Query: 1152 RGFAHGTVIKVERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLD 997
RGF++GTV K E+I+L R R ++ P+E ++ + DGLPI G
Sbjct: 791 RGFSYGTVYKTEKIDLSLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEG 850
Query: 996 EVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIV-EQGEGDSGAKHALIQWRIERNPIIGD 820
+ F+ + +H +EPAY V ++ ++ ++ I++RI R P IGD
Sbjct: 851 DPICAYFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGD 910
Query: 819 KFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATH 640
KF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIGM +ES+AGKA A H
Sbjct: 911 KFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALH 970
Query: 639 GENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQR 460
G DA+P+ F+E++T ++FG+ L KAGYNY+GNE YSG G ++ I+ G+VYYQR
Sbjct: 971 GIAQDATPWTFSEEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQR 1030
Query: 459 LRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNC 280
LRHM+ DKFQVR+TGP++ +T QPV GIR GEMERDA+I HGTSF+LQDRLLN
Sbjct: 1031 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNS 1090
Query: 279 SDRDVAYACRRCGSLLSVLMS-SRAGSHLLKKKRKDDEPLDYTETQRCRT-CDKDDQVFL 106
SD + CR CGS+L+ S + GS + + R+ + + E ++ T D +D +F+
Sbjct: 1091 SDYTQSAVCRECGSILTTQSSVPKIGSMVTIRCRRC--AISFDEAKKIITQQDSEDSIFI 1148
Query: 105 ----------------------LQVPRVFRYLTAELAAMNVKIKLGIE 28
+ +P V +YL +ELAAM ++++ ++
Sbjct: 1149 DDSHIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVD 1196
>gi|46122499|ref|XP_385803.1| hypothetical protein FG05627.1
[Gibberella zeae PH-1]
gi|42552355|gb|EAA75198.1| hypothetical protein FG05627.1 [Gibberella
zeae PH-1]
Length = 1201
Score = 747 bits (1928), Expect = 0.0
Identities = 445/1141 (39%), Positives = 634/1141 (55%), Gaps = 62/1141 (5%)
Frame = -1
Query: 3264 VTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII 3085
+T+++ L KP + KL + + PAECR+R +TY G L ++ +NG D +
Sbjct: 87 LTVRYKDVFLQKPQVPPSNKLARNR-QVFPAECRERHVTYRGRLSATLEYRINGG--DPV 143
Query: 3084 EII--LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRN 2911
E G+VP+M++S CHL G S LV EE E GGYF+VNG EK+IR+L N+RN
Sbjct: 144 EFTREFGQVPVMIKSNRCHLEGNSPALLVERKEESEELGGYFVVNGIEKIIRMLQLNKRN 203
Query: 2910 FPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVP 2731
FP+AI R +F+ +G ++ +G+++R+V+ + T+ LHYL+ G M +R+ + VP
Sbjct: 204 FPMAINRPSFQNRGPGYTPYGIILRAVRPDETSQTNVLHYLNDGNMTFRFSWRKNEYLVP 263
Query: 2730 LMYIVKALTDKNDAVI------SAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIR 2569
+M I+KAL + ND I AG K N F + I +L + + ++
Sbjct: 264 VMMILKALVETNDREIFEGLVGPAGSKAAGNT--FLTDRIELLLRTYKSYNLYSKSDTRA 321
Query: 2568 AIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL-------DSDEEKFHTLAYMTQKL 2410
+G +FRV + V + E G +R+ VL+HL + D EK+ + +M +KL
Sbjct: 322 FLGEKFRVVLG--VPDTMTNYEVGTEFLRKIVLVHLGNVDVTEEQDNEKYKLILFMIRKL 379
Query: 2409 IALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGM-VRRKL-EYMSSRKDFIL 2236
ALV GECA + PD Q QE + G + IL+ER + + + VR + +Y
Sbjct: 380 YALVAGECAVDNPDAVQNQEILLGGFLYGQILKERFDEFLSVNVRGSMRDYFRRNPGIPF 439
Query: 2235 TSAAILKALGNH----TGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRF 2068
TS K N+ + + YF++TGNL ++ GL LQQ +GF+V+AE++N RF
Sbjct: 440 TSEEFRKEFPNNIFRKANENLGNALEYFMSTGNLQSQSGLDLQQTAGFTVVAEKLNFTRF 499
Query: 2067 VSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLS 1888
+SHFR +HRGAFF +++TT VRKL PE+WGF+CPVHTPDG+PCGLLNH+ C I TD
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLARKCSITTDYL 559
Query: 1887 DNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVA 1708
D S++ +L AELG+ + + +E V+M+G+ LGY ++ I R KV
Sbjct: 560 DVSHIATLAAELGVVDVSSAST----DENVVVMMDGKILGYCTPKESVRIADCFRYWKVE 615
Query: 1707 KDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQV 1528
+P EI V S YPG+Y+ S R++RPV+ L + + +G +EQ
Sbjct: 616 GTHGVPLQLEIGYVPPSRG-----GSYPGVYLTSTPARMVRPVKYLPLQKEDWVGPYEQP 670
Query: 1527 YLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAV 1348
Y+S+ + P+E E G + H E P+ + S N+ PF D NQSP CQM KQTMGT
Sbjct: 671 YMSIAVVPQEIESGKSTHVEFDPTNILSILANMTPFSDFNQSP-----CQMAKQTMGTPG 725
Query: 1347 HAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTIN 1168
A R DNK Y++Q Q P+++ + Y D +P G NA VAVISYTGYDM+DAM +N
Sbjct: 726 TASVYRTDNKSYQIQTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILN 785
Query: 1167 KASYQRGFAHGTVIKVERINLVTERERKTI------FYRNPREEIKT-----VGPDGLPI 1021
K++++RGF HGT+ K ++I+L + K F P + + DGLP
Sbjct: 786 KSAHERGFGHGTIYKTKKISLKDDSRTKATKSVTKAFGFAPHSHVSAHHQGMLDDDGLPH 845
Query: 1020 PGRRYFLDEVYYVTFNMETGDFR---------TH--KFHYAEPAYCGLVRIVEQGEGDSG 874
GR +V ++ T D+ TH K+ +E + VR++ G+
Sbjct: 846 VGRLIQEGDVI-CAWHTVTPDYNGKLVNLDGITHYEKYKDSEEGFIETVRLIGAESGNEP 904
Query: 873 AKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSR 694
+ I++RI R+PI+GDKF+SRHGQKG+ S WP LPFSET
Sbjct: 905 LQTVSIKFRIPRSPIVGDKFSSRHGQKGVASQKWPTMDLPFSET---------------- 948
Query: 693 MTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGV 514
AGKA A HG D++PF F+E+NTA ++FG L KAGYNY+GNE YSG+
Sbjct: 949 ----------AGKAGALHGLAQDSTPFKFDEENTAGDYFGHQLMKAGYNYHGNEPMYSGI 998
Query: 513 DGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERD 334
G +++ I+ G+VYYQRLRHM+ DK+QVR TGP+ P T QP+ GIR GEMERD
Sbjct: 999 TGEELQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKRGGGIRVGEMERD 1058
Query: 333 AIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKK----------- 187
A++AHGT+F+LQDRLLNCSD ++ CRRCGS LSV + + KK
Sbjct: 1059 ALLAHGTAFLLQDRLLNCSDYSKSWICRRCGSFLSVQPTVSQFAPGKKKAPSIVRCRACA 1118
Query: 186 -KRKDDEPLDYTETQRCRTCD-------KDDQVFLLQVPRVFRYLTAELAAMNVKIKLGI 31
K D + +D TE Q D DQ + VP +YL ELAAM VK+K +
Sbjct: 1119 IKLDDADAVDLTEVQGEIWEDGLGSSWVGGDQTTQVVVPGALKYLDVELAAMGVKLKYRV 1178
Query: 30 E 28
+
Sbjct: 1179 D 1179
>gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens]
Length = 714
Score = 727 bits (1876), Expect = 0.0
Identities = 365/727 (50%), Positives = 485/727 (66%), Gaps = 5/727 (0%)
Frame = -1
Query: 2196 GGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMR 2017
G ++T+ Y ATGNL ++ GL L Q+SG V+A+++N +R++SHFR +HRGA F +MR
Sbjct: 2 GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMR 61
Query: 2016 TTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTH 1837
TT VR+L PE+WGF+CPVHTPDG PCGL+NH+TA C +VT +++P+LL LG+ T
Sbjct: 62 TTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGV-TP 120
Query: 1836 KTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRS 1657
A E YPVL++G +G+V A I LR KV ++ RIP E+ L+
Sbjct: 121 IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLI--- 177
Query: 1656 TDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTM 1477
+ + YPG+++ + RL+RPV+NLA+ E IGT EQ++++V + +E GVT
Sbjct: 178 -PMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTT 236
Query: 1476 HQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFP 1297
HQEL P L S N IPF DHNQSPRN+YQCQMGKQTMG + + R+DNK+YRLQ P
Sbjct: 237 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 296
Query: 1296 QQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVE 1117
Q P+++ Y+ Y+MD YP+GTNA VAV SYTGYDMEDAM +NKAS++RGFAHG+V K E
Sbjct: 297 QSPLVRPSMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAHGSVYKSE 356
Query: 1116 RINL---VTERERKTIFYRNPREE--IKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFR 952
I+L + + + +F P + ++ + DGLP G + + YY N+ TG+
Sbjct: 357 FIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESF 416
Query: 951 THKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLW 772
+ E +++ G K I R+ RNP IGDKFASRHGQKGI S LW
Sbjct: 417 VMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW 476
Query: 771 PVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNT 592
P E +PF+E+GMVPDI+FNPHGFPSRMTIGM+IESMAGK+AA HG +DA+PF+F+E+N+
Sbjct: 477 PAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENS 536
Query: 591 AINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGP 412
A+ +FGE+L AGYN+YG E YSG+ G ++E IF G+VYYQRLRHM++DKFQVR TG
Sbjct: 537 ALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGA 596
Query: 411 IDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLL 232
D +T+QP+ GIRFGEMERDA++AHGTSF+L DRL NCSDR VA+ C +CGSLL
Sbjct: 597 RDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLL 656
Query: 231 SVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMN 52
S L+ S + RK C C + D + + VP VFRY AELAAMN
Sbjct: 657 SPLLEKPPPSWSAMRNRK----------YNCTLCSRSDTIDTVSVPYVFRYFVAELAAMN 706
Query: 51 VKIKLGI 31
+K+KL +
Sbjct: 707 IKVKLDV 713
>gi|18397295|ref|NP_564341.1| DNA-directed RNA polymerase family
protein [Arabidopsis thaliana]
gi|25518380|pir||B86423 hypothetical protein T1P2.15 - Arabidopsis
thaliana
gi|12324162|gb|AAG52049.1| DNA-directed RNA polymerase subunit,
putative; 8546-1198 [Arabidopsis thaliana]
Length = 1114
Score = 701 bits (1810), Expect = 0.0
Identities = 416/1106 (37%), Positives = 624/1106 (55%), Gaps = 44/1106 (3%)
Frame = -1
Query: 3195 DTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSR 3016
D + L +CRQ ++Y G + N + + G+ PIML S+ C L+G
Sbjct: 31 DYMTLKGLDCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADC 90
Query: 3015 KELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMR 2836
++L+ E E GGYFI+NG E+V R +IA +RN P ++IR +F+++ + +S V+ R
Sbjct: 91 RKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTR 150
Query: 2835 SVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVI--------S 2680
V+++ ++V + L+YL G+ ++ + +P+ ++KALT+ D I S
Sbjct: 151 CVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYS 210
Query: 2679 AGFKRGRNQ--DQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDL 2506
+ RG Q +L + ++ + +E + +G F+ V D VA
Sbjct: 211 EHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQ-PVLDGVA------ 263
Query: 2505 EAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHIL 2326
++R+ + +HLD+D +KF+ L ++ QKL +LV P+ PD+ Q QE V GH++
Sbjct: 264 ---EAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVI 320
Query: 2325 LLILRERMENII----GMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLA 2158
+ L+E++E + +++ +L+ +S+ F + A + K + + I + L
Sbjct: 321 TIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFE-SLADVKKLINKNPPRSIGTSIETLLK 379
Query: 2157 TGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWG 1978
TG L T+ GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WG
Sbjct: 380 TGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWG 439
Query: 1977 FICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSN----------VPSLLAELGMYTH--K 1834
F+CPVHTPDG PCGLLNH+T + RI + N V +L GM K
Sbjct: 440 FLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPK 499
Query: 1833 TVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRST 1654
V PP ++ VL++G+ +G + + Y+R KV + IP E+ V S
Sbjct: 500 LVRAGPP--KVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTS- 556
Query: 1653 DIKNIQTQYPGIYILSDAGRLIRPVRNLAM--DAVEHIGTFEQVYLSVVLDPEEAEPGVT 1480
+ YPG+Y+ S R IRPV+N+++ D +E IG FEQV + + P
Sbjct: 557 ----MGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPAT- 611
Query: 1479 MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQF 1300
H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTM + A RAD K+Y LQ
Sbjct: 612 -HEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 670
Query: 1299 PQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKV 1120
PQ P+++ + Y Y +DE P GTNA VAV+++TG+DMEDAM +NK+S +RG HG + +
Sbjct: 671 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 730
Query: 1119 ERINLVTERER-----KTIFYRNPREEIKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDF 955
E I+L + R K+ + E + DGLP G++ + DE Y ++ T
Sbjct: 731 ENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKT 790
Query: 954 RTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFL 775
R K +P V + + + A I++R RNPIIGDKF+SRHGQKG+ S L
Sbjct: 791 RHMKRKGTDPVIVDFVSV--DMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQL 848
Query: 774 WPVESLPFS-ETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPF----- 613
WP +PF+ TGM PD+I NPH FPSRMTI M++ES+A K + HG+ DA+PF
Sbjct: 849 WPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVK 908
Query: 612 -----VFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHM 448
++ + ++ G +L + G+N+YG ET YSG G +++ +IF G VYYQRLRHM
Sbjct: 909 KTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHM 968
Query: 447 IADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRD 268
++DKFQVR+TG +D +THQP+ GIRFGEMERD+++AHG S++L DRL SD
Sbjct: 969 VSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHH 1028
Query: 267 VAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRV 88
+A C CGSLL+ + + L+++ K P + C +C + + +P V
Sbjct: 1029 IADVCSLCGSLLTSSVVNVQQKKLIQEIGK-LPPGRTPKKVTCYSCKTSKGMETVAMPYV 1087
Query: 87 FRYLTAELAAMNVKIKLGIEHPSKVT 10
FRYL AELA+MN+K+ L + VT
Sbjct: 1088 FRYLAAELASMNIKMTLQLSDREGVT 1113
>gi|9972352|gb|AAG10602.1| Similar to DNA-directed RNA polymerase
subunit [Arabidopsis thaliana]
Length = 1233
Score = 699 bits (1803), Expect = 0.0
Identities = 425/1140 (37%), Positives = 625/1140 (54%), Gaps = 74/1140 (6%)
Frame = -1
Query: 3207 KLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLR 3028
K TS PLLP ECRQ ++Y G + N + + G+ PIML S+ C L+
Sbjct: 109 KSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLK 168
Query: 3027 GMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFG 2848
G ++L+ E E GGYFI+NG E+V R +IA +RN P ++IR +F+++ + +S
Sbjct: 169 GADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKA 228
Query: 2847 VMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVI----- 2683
V+ R V+++ ++V + L+YL G+ ++ + +P+ ++KALT+ D I
Sbjct: 229 VVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLN 288
Query: 2682 ---SAGFKRGRNQ--DQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPW 2518
S + RG Q +L + ++ + +E + +G F+ V D V
Sbjct: 289 CCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQ-PVLDGVKKE 347
Query: 2517 EDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVS 2338
+ A ++R+ + +HLD+D +KF+ L ++ QKL +LV P+ PD+ Q QE V
Sbjct: 348 SLSIVA-EAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVP 406
Query: 2337 GHILLLILRERMENIIGMVRRKL--EYMSSRKDFILTSAAILKALGNHTGGEITRGMAYF 2164
GH++ + L+E++E + + L E ++ F S L L + G I
Sbjct: 407 GHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESRKSLLILFSLIGTSIET----L 462
Query: 2163 LATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEA 1984
L TG L T+ GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+
Sbjct: 463 LKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPES 522
Query: 1983 WGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSN----------VPSLLAELGMYTH- 1837
WGF+CPVHTPDG PCGLLNH+T + RI + N V +L GM
Sbjct: 523 WGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSL 582
Query: 1836 -KTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRR 1660
K V PP ++ VL++G+ +G + + Y+R KV + IP E+ V
Sbjct: 583 PKLVRAGPP--KVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPT 640
Query: 1659 STDIKNIQTQYPGIYILSDAGRLIRPVRNLAM--DAVEHIGTFEQVYLSVVLDPEEAEPG 1486
S + YPG+Y+ S R IRPV+N+++ D +E IG FEQV + + PG
Sbjct: 641 S-----MGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPG 695
Query: 1485 V--------------------------------TMHQELHPSCLFSFAGNLIPFPDHNQS 1402
+ H+E+HP+ + S NL P+ DHNQS
Sbjct: 696 IQSNEKKKILPNQVFMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQS 755
Query: 1401 PRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNAC 1222
PRN+YQCQM KQTM + A RAD K+Y LQ PQ P+++ + Y Y +DE P GTNA
Sbjct: 756 PRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAI 815
Query: 1221 VAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERER-----KTIFYRNPRE 1057
VAV+++TG+DMEDAM +NK+S +RG HG + + E I+L + R K+ +
Sbjct: 816 VAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKA 875
Query: 1056 EIKTVGPDGLPIPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS 877
E + DGLP G++ + DE Y ++ T R K +P V + +
Sbjct: 876 EHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSV--DMKSKK 933
Query: 876 GAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFS-ETGMVPDIIFNPHGFP 700
+ A I++R RNPIIGDKF+SRHGQKG+ S LWP +PF+ TGM PD+I NPH FP
Sbjct: 934 HPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFP 993
Query: 699 SRMTIGMMIESMAGKAAATHGENYDASPF----------VFNEDNTAINHFGELLTKAGY 550
SRMTI M++ES+A K + HG+ DA+PF ++ + ++ G +L + G+
Sbjct: 994 SRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGF 1053
Query: 549 NYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVXXXXX 370
N+YG ET YSG G +++ +IF G VYYQRLRHM++DKFQVR+TG +D +THQP+
Sbjct: 1054 NHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKR 1113
Query: 369 XXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLK 190
GIRFGEMERD+++AHG S++L DRL SD +A C CGSLL+ + + L++
Sbjct: 1114 GGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQ 1173
Query: 189 KKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSKVT 10
+ K P + C +C + + +P VFRYL AELA+MN+K+ L + VT
Sbjct: 1174 EIGK-LPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSDREGVT 1232
>gi|46227419|gb|EAK88354.1| RNA polymerase 1 beta subunit
[Cryptosporidium parvum]
Length = 1281
Score = 657 bits (1696), Expect = 0.0
Identities = 456/1277 (35%), Positives = 647/1277 (49%), Gaps = 161/1277 (12%)
Frame = -1
Query: 3375 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTL----DTGA 3208
++ +VDS + C+ A PAE R+ TSA++ KP +G
Sbjct: 34 NLPKIYVDSG--FIQDDCELNAAYSPAEYLRIG--------VTSAKIGKPIFGNSESSGT 83
Query: 3207 KLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIE---IILGKVPIMLRSEGC 3037
KLT P R ++Y+ L + + + S LD + I G +PIM++S C
Sbjct: 84 KLT-------PQHARNGHISYSAPLWLEFEGY--NSSLDTVSKHSIYAGTIPIMVKSSSC 134
Query: 3036 HLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFS 2857
HL G+ KELV GE+P E GGYFI+NG+E+VIR +I R N+PI + R F S
Sbjct: 135 HLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDSFGS 194
Query: 2856 EFGVMMRSVKENHTAVMMTLHYL----DTGTMQLALQFRRE--IFYVPLMYIVKALTDKN 2695
E+ V+MRS++++ T+ T +YL D + L R+E I + PL+ V ++ D N
Sbjct: 195 EYAVLMRSLRDDGTS---TANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLMAVGSIYDSN 251
Query: 2694 DAVISAGFKRGRNQDQFYSSCILNML-------------AQCQEEEILN---------QE 2581
V+ + + N +NML A+ N +
Sbjct: 252 --VLRSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAEFNSVSFGNKGPGDTDILEN 309
Query: 2580 AAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIAL 2401
+ IG V+ + P EAGRF+I VL+HL+ K L M KLI L
Sbjct: 310 RYLHQIGRLVWEGVAFHLPPGSLLQEAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKL 369
Query: 2400 VKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRR----KLEYMSSRKDF--- 2242
E E+ D+ +QE G++ + ++ + + + +R ++ S K+
Sbjct: 370 QLNEIREESIDSFAYQELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESK 429
Query: 2241 ----ILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQL 2074
+L A K++ + I + + YF+ATGN+ T L LQQ SG++V+A+R+N
Sbjct: 430 NGVNLLRDTAYFKSVLSKNISMIPKRLQYFMATGNVKT-TQLDLQQLSGWTVVADRLNFN 488
Query: 2073 RFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTD 1894
RF+SHFRA+HRG FF M+TTDVRKL E WGF+CPVHTPDG PCGLL H++ C VT
Sbjct: 489 RFLSHFRAVHRGQFFTTMKTTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQ 548
Query: 1893 ------------------LSDNSNVPSLLAELGMYTHKTVALAPPG-EELYPVLMNGRFL 1771
+S + + SL + G+ + L P + PV+++GR L
Sbjct: 549 WDSQETLRRLRNYLISHGISCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIPVMLDGRVL 608
Query: 1770 GYVPITKAASIERYLRCAKVAKDARI-PYTSEIALVRRSTDIKNIQTQYPGIYILSDAGR 1594
++P E LR K + + P +EIA V + + + GIYI + GR
Sbjct: 609 FHIPREDFMVWENKLRTLKWQTNPSVLPVHAEIACVPPDSGM------FSGIYIFTAPGR 662
Query: 1593 LIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTM--------------------- 1477
L+RP+ +L V+ IG Q ++++ + EE +
Sbjct: 663 LVRPIMHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQKRLIGISDTESEEQLKN 722
Query: 1476 ------------------------HQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGK 1369
H ELHPS + S +LIP+ HNQSPRN+YQCQM K
Sbjct: 723 DLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLK 782
Query: 1368 QTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDM 1189
QTMGT R DNKMYRL PQ+P + + Y + EYP GTNA VAV+SY+GYDM
Sbjct: 783 QTMGTPCLNHPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDM 842
Query: 1188 EDAMTINKASYQRGFAHGTVIKVERINLVT-----ERERKTIFYRN--PREE--IKTVGP 1036
EDAM +NK+SY RG H V K + I+ + + ++ F+ N P E +K +
Sbjct: 843 EDAMILNKSSYDRGMFHACVYKTKIISAAPPSATKKSDAESYFFHNIGPDGELVVKELSA 902
Query: 1035 DGLPIPGRRYFLDEVYYVTFNMETG----DFRTHKFHYAEPAYCGLVRIVEQG------- 889
DGLP G+R + +G + +H E A+ + + G
Sbjct: 903 DGLPNIGQRLTKGSPICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGISIELQQ 962
Query: 888 -----EGDSGAKHAL-------IQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSE 745
G GA + I+ RI RNP++GDKFASRHGQKGI S LWP E++PFSE
Sbjct: 963 DSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSE 1022
Query: 744 TGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHG-ENYDASPFVFN--------EDN- 595
+GMVPDI+FNPHGFPSRMTIGM++ESM GKAA HG + DA+PF N E+N
Sbjct: 1023 SGMVPDILFNPHGFPSRMTIGMLLESMGGKAACIHGARSLDATPFNINISDDLSRSEENC 1082
Query: 594 --------TAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIAD 439
T +++FG+ L +AG+ YYG E Y+G+ G ++ IF G++YYQRLRHM+AD
Sbjct: 1083 EDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVAD 1142
Query: 438 KFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAY 259
K QVRATGPID +T QPV GIRFGEMERD++I++G S +L DRLL CSD AY
Sbjct: 1143 KAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLICSDEHRAY 1202
Query: 258 ACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRY 79
C +CG ++S + + K + P CR C ++ L P +FRY
Sbjct: 1203 VCPKCGLIISSISKRAMAQSMSSSKLSNCIP----PIAVCRVCKSPCRIITL--PYIFRY 1256
Query: 78 LTAELAAMNVKIKLGIE 28
L+ ELAAMN+ I+L ++
Sbjct: 1257 LSNELAAMNIVIRLHLQ 1273
>gi|37535682|ref|NP_922143.1| putative DNA-directed RNA polymerase I
subunit, 5'-partial [Oryza sativa (japonica
cultivar-group)]
gi|31432843|gb|AAP54430.1| putative DNA-directed RNA polymerase I
subunit, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 1022
Score = 637 bits (1644), Expect = 0.0
Identities = 390/1056 (36%), Positives = 575/1056 (53%), Gaps = 70/1056 (6%)
Frame = -1
Query: 2976 GGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTL 2797
GGYFI G E+++R+LI +RN+P+ +IR +F +G +++ V++R V+++ ++V + L
Sbjct: 2 GGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKL 61
Query: 2796 HYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVI--------SAGFKRGRN--QDQ 2647
+YL G+ +L F +P+ ++KAL D +D I S ++RG+ Q
Sbjct: 62 YYLLNGSARLGFWLGGREFLLPVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQ 121
Query: 2646 FYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEA-GRFIIRECVL 2470
+L + ++ + + + +G FR + +DD E ++++ +
Sbjct: 122 LIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFE---KDDFETVAEAVLKDYIF 178
Query: 2469 IHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENII 2290
+HL ++ +KF+ L +M QKL A+V +P+ D Q+QE + GH++ + L++R+++ +
Sbjct: 179 VHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWL 238
Query: 2289 GMVRRKLEYMSSR---------KDFIL------TSAAILKALG----------------- 2206
+R + +++ +DFIL TS I + G
Sbjct: 239 RKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFL 298
Query: 2205 NHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFM 2026
+ T + + + + G + ++ GL L Q G ++ AER+N R++SHFR++HRG+ F
Sbjct: 299 SKTSAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFA 358
Query: 2025 EMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVP-------S 1867
+MRTT VRKL PE+WGF+CPVHTPDG PCGLLNH+T++CRI + + S
Sbjct: 359 KMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMS 418
Query: 1866 LLAEL-----GMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKD 1702
L+A L + PP E+ V ++G +G + K +
Sbjct: 419 LIARLVGAGMAQLLPRIERTGPP--EVLHVHVDGCIVGSIASAKIEEV------------ 464
Query: 1701 ARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYL 1522
IP E+ V S YPG+Y+ ++ R +RP F ++
Sbjct: 465 --IPEDLEVGYVPLSHG-----GAYPGLYLFTNPARFLRPA-------------FMEIRC 504
Query: 1521 SVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHA 1342
D + H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTMG A
Sbjct: 505 PDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQA 564
Query: 1341 WHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKA 1162
R D K + LQ PQ P+++ Y KY MDE+P GTNA VAV+SYTGYDMEDAM +NK+
Sbjct: 565 LKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKS 624
Query: 1161 SYQRGFAHGTVIKVERINL-VTERERKTIFY---RNPREEIKTVGPDGLPIPGRRYFLDE 994
+ RG G + + E I+L R+ T F+ R+ + DGLP G F +E
Sbjct: 625 AVDRGMFRGHIFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNE 684
Query: 993 VYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKF 814
YY N TG R K +EPA V + D K A I+ R RNPIIGDKF
Sbjct: 685 QYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQK-ANIRLRRVRNPIIGDKF 743
Query: 813 ASRHGQKGINSFLWPVESLPFS-ETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHG 637
+SRHGQKG+ S LWP +PFS TGM PD+I NPH FPSRMTI M++ES+A KA + G
Sbjct: 744 SSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSLKG 803
Query: 636 ENYDASPF---VFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYY 466
+ DA+PF V N+ ++ G +L G+NY+G E YSGV G +M+ +IF G VYY
Sbjct: 804 KFIDATPFASSVKERSNSIVDELGPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYY 863
Query: 465 QRLRHMIADKFQVRATGPIDPITHQPVXXXXXXXGIRFGEMERDAIIAHGTSFVLQDRLL 286
QRLRHM++DKFQVR TG ID IT QP+ GIRFGEMERDA++AHG S++L DRL
Sbjct: 864 QRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLH 923
Query: 285 NCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQR---CRTCDKDDQ 115
+CSD +A C CGSLL+ + S KK ++D L + + C+ C
Sbjct: 924 SCSDYHIADVCSICGSLLTATVIK---SESQKKAKRDMLGLPTVKPPKNFACQACKTSKG 980
Query: 114 VFLLQVPRVFRYLTAELAAMNVKIKLGI----EHPS 19
+ + +P VFRYL +ELAAMN+K++L + EHP+
Sbjct: 981 METVAMPYVFRYLASELAAMNIKLELRLSNRTEHPT 1016