Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= F11G11_3
         (672 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17533105|ref|NP_494874.1| DNaJ domain (prokaryotic heat shock...   285   4e-76
gi|39579439|emb|CAE56767.1| Hypothetical protein CBG24571 [Caeno...   227   2e-58
gi|39580299|emb|CAE56034.1| Hypothetical protein CBG23599 [Caeno...    37   0.35
gi|17565828|ref|NP_504219.1| putative protein family member (5E8...    35   1.8
gi|17565838|ref|NP_504218.1| putative protein family member (5E8...    35   1.8
gi|17565844|ref|NP_504224.1| putative protein family member (5E9...    35   1.8
gi|37515183|gb|AAF60632.2| Hypothetical protein Y47D7A.11 [Caeno...    35   1.8
gi|17565836|ref|NP_504217.1| predicted CDS, putative protein fam...    34   2.3
gi|32420411|ref|XP_330649.1| hypothetical protein [Neurospora cr...    33   5.1
gi|46109466|ref|XP_381791.1| hypothetical protein FG01615.1 [Gib...    33   6.7
gi|42820668|emb|CAF31981.1| possible mannosylphosphorylation pro...    33   6.7
gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Myc...    33   6.7


>gi|17533105|ref|NP_494874.1| DNaJ domain (prokaryotic heat shock
           protein) (23.7 kD) (dnj-9C) [Caenorhabditis elegans]
 gi|7498936|pir||T29976 hypothetical protein F11G11.5 -
           Caenorhabditis elegans
 gi|1707081|gb|AAB37837.1| Hypothetical protein F11G11.5
           [Caenorhabditis elegans]
          Length = 223

 Score =  285 bits (730), Expect = 4e-76
 Identities = 147/223 (65%), Positives = 147/223 (65%)
 Frame = +1

Query: 1   MTGHQDPVKQPLPDSPPTDEGMXXXXXXXXXXXXXXXXXXXXXXXXXXAGFVYPSTDIQN 180
           MTGHQDPVKQPLPDSPPTDEGM                          AGFVYPSTDIQN
Sbjct: 1   MTGHQDPVKQPLPDSPPTDEGMSSSSAQPSAPSAPEQQPTSPSRPPPPAGFVYPSTDIQN 60

Query: 181 SSEVXXXXXXXXXXXXXXXXXXXXXTMSSYDMPPPSYQAAMSYPAAPTYGGSTDPKYHNG 360
           SSEV                     TMSSYDMPPPSYQAAMSYPAAPTYGGSTDPKYHNG
Sbjct: 61  SSEVHVSAPVPAGPPPPHASAGPAPTMSSYDMPPPSYQAAMSYPAAPTYGGSTDPKYHNG 120

Query: 361 GXXXXXXXXXXXXXXRLPQPAAIEQIVRAVRIQNPAGSNVIVHVQPGAPCRRCTVGVITR 540
           G              RLPQPAAIEQIVRAVRIQNPAGSNVIVHVQPGAPCRRCTVGVITR
Sbjct: 121 GQPPIYYQPPQITQTRLPQPAAIEQIVRAVRIQNPAGSNVIVHVQPGAPCRRCTVGVITR 180

Query: 541 QTDXXXXXXXXXXXXXXXPFGLIFLCCVPCTVQNRCTHCNRLA 669
           QTD               PFGLIFLCCVPCTVQNRCTHCNRLA
Sbjct: 181 QTDMCCLLCLIMLTIFTFPFGLIFLCCVPCTVQNRCTHCNRLA 223




[DB home][top]