Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= C12D8_12
(1116 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|17557834|ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly... 722 0.0
gi|39593305|emb|CAE64775.1| Hypothetical protein CBG09566 [Caeno... 660 0.0
gi|29566703|ref|NP_818270.1| gp220 [Mycobacteriophage Bxz1] >gnl... 239 6e-62
gi|1173109|sp|P42700|RO60_XENLA 60-kDa SS-A/Ro ribonucleoprotein... 237 4e-61
gi|133251|sp|P10155|RO60_HUMAN 60-kDa SS-A/Ro ribonucleoprotein ... 235 1e-60
gi|31377800|ref|NP_004591.2| 60kD Ro/SSA autoantigen; ribonucleo... 235 1e-60
gi|7305523|ref|NP_038863.1| 60kD Ro/SSA autoantigen [Mus musculu... 233 5e-60
gi|3098484|gb|AAC15667.1| 60 kDa ribonucleoprotein Ro [Mus muscu... 233 5e-60
gi|6606074|gb|AAF19049.1| 60 kDa ribonucleoprotein SSA/Ro [Mus m... 233 5e-60
gi|18654142|gb|AAL77518.1| ribonucleoprotein [Mus musculus] 233 6e-60
gi|30851484|gb|AAH52380.1| Ssa2 protein [Mus musculus] 233 8e-60
gi|30704899|gb|AAH51974.1| 60kD Ro/SSA autoantigen [Mus musculus] 233 8e-60
gi|27712352|ref|XP_222686.1| similar to Mus musculus 60kDa SS-A/... 232 1e-59
gi|28793967|gb|AAO47002.1| gastric cancer multi-drug resistance ... 231 2e-59
gi|50750952|ref|XP_422201.1| PREDICTED: similar to 60-kDa SS-A/R... 229 9e-59
gi|387657|gb|AAA35532.1| ribonucleoprotein autoantigen 60 kd sub... 217 4e-55
gi|28793828|gb|AAO47001.1| gastric cancer multi-drug resistance ... 216 6e-55
gi|15806281|ref|NP_294986.1| ribonucleoprotein Ro/SS-A-related p... 203 5e-51
gi|47227899|emb|CAF97528.1| unnamed protein product [Tetraodon n... 183 5e-45
gi|23126570|ref|ZP_00108461.1| COG2425: Uncharacterized protein ... 153 8e-36
gi|45525382|ref|ZP_00176618.1| COG2425: Uncharacterized protein ... 96 1e-18
gi|45525383|ref|ZP_00176619.1| hypothetical protein Cwat024022 [... 55 4e-06
gi|48858859|ref|ZP_00312804.1| hypothetical protein Chte02001895... 50 7e-05
gi|48731794|ref|ZP_00265538.1| hypothetical protein Pflu02002014... 47 6e-04
gi|16766808|ref|NP_462423.1| putative ribonucleoprotein related-... 45 0.004
gi|48120599|ref|XP_396467.1| similar to ribonucleoprotein [Apis ... 42 0.026
gi|47212116|emb|CAF92033.1| unnamed protein product [Tetraodon n... 42 0.033
gi|31241529|ref|XP_321195.1| ENSANGP00000020869 [Anopheles gambi... 41 0.057
gi|27468347|ref|NP_764984.1| FmtB protein [Staphylococcus epider... 36 1.8
gi|50289481|ref|XP_447172.1| unnamed protein product [Candida gl... 35 2.4
gi|49077650|ref|XP_402660.1| hypothetical protein UM05045.1 [Ust... 35 3.1
gi|48104706|ref|XP_392964.1| similar to ENSANGP00000012035 [Apis... 35 4.1
gi|23016784|ref|ZP_00056536.1| COG0477: Permeases of the major f... 35 4.1
gi|120400|sp|P17834|FMBI_BACNO FIMBRIAL ASSEMBLY PROTEIN (SEROGR... 34 5.3
gi|42784499|ref|NP_981746.1| stage II sporulation protein R, put... 34 5.3
gi|47192944|emb|CAG14357.1| unnamed protein product [Tetraodon n... 34 5.3
gi|48825884|ref|ZP_00287120.1| COG0789: Predicted transcriptiona... 34 5.3
gi|50427513|ref|XP_462369.1| unnamed protein product [Debaryomyc... 34 7.0
gi|9629389|ref|NP_044610.1| UL9 [Human herpesvirus 1] >gnl|BL_OR... 34 7.0
gi|9937311|gb|AAG02411.1| phloem serpin-1 [Cucurbita maxima] 34 7.0
gi|467292|gb|AAA17387.1| glutamine-asparagine rich protein 34 7.0
gi|24620453|gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 33 9.1
gi|15921089|ref|NP_376758.1| 386aa long hypothetical transposase... 33 9.1
gi|27476037|ref|NP_775239.1| constituent protein [Pseudomonas ae... 33 9.1
gi|29376668|ref|NP_815822.1| regulatory protein GlnR [Enterococc... 33 9.1
gi|24620455|gb|AAN61519.1| 1MDa_1 protein [Caenorhabditis elegans] 33 9.1
gi|48892712|ref|ZP_00326045.1| COG1196: Chromosome segregation A... 33 9.1
gi|16080738|ref|NP_391566.1| ATP synthase (subunit b) [Bacillus ... 33 9.1
gi|24620454|gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans] 33 9.1
gi|15922025|ref|NP_377694.1| 289aa long conserved hypothetical p... 33 9.1
gi|17565434|ref|NP_504585.1| fibronectin, type III and M protein... 33 9.1
>gi|17557834|ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an
RNA quality control checkpoint (72.8 kD) (rop-1)
[Caenorhabditis elegans]
gi|12643738|sp|Q27274|RO60_CAEEL 60-kDa SS-A/Ro ribonucleoprotein
homolog
gi|7511637|pir||T19225 Ro autoantigen 60K homolog - Caenorhabditis
elegans
gi|784872|gb|AAC41575.1| Ro ribonucleoprotein autoantigen
gi|905359|gb|AAA96949.1| ribonucleoprotein Ro autoantigen homolog
gi|3874263|emb|CAA98241.1| Hypothetical protein C12D8.11
[Caenorhabditis elegans]
gi|3880715|emb|CAA16325.1| Hypothetical protein C12D8.11
[Caenorhabditis elegans]
gi|1586552|prf||2204248A 60kD Ro autoantigen
Length = 643
Score = 722 bits (1864), Expect = 0.0
Identities = 361/371 (97%), Positives = 361/371 (97%)
Frame = -1
Query: 1116 DRLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALN 937
DRLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALN
Sbjct: 273 DRLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALN 332
Query: 936 LVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETLFDVSMPMTAMIRNLA 757
LVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETLFDVSMPMTAMIRNLA
Sbjct: 333 LVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETLFDVSMPMTAMIRNLA 392
Query: 756 KMTVVGALDEKRVDNIVKRLTDQEELRRSRIHPINLLTARAVYAQGRGDKGSLTWEPNQK 577
KMTVVGALDEKRVDNIVKRLTDQEELRRSRIHPINLLTARAVYAQGRGDKGSLTWEPNQK
Sbjct: 393 KMTVVGALDEKRVDNIVKRLTDQEELRRSRIHPINLLTARAVYAQGRGDKGSLTWEPNQK 452
Query: 576 ICDALEAGFYKAFVNAPPTGKRYCLALDVXXXXXXXXXXSPLSCREAATGMSLINLHNEA 397
ICDALEAGFYKAFVNAPPTGKRYCLALDV SPLSCREAATGMSLINLHNEA
Sbjct: 453 ICDALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSCREAATGMSLINLHNEA 512
Query: 396 EVRCVAFCDKLTELPFTKDWKIGQVNDYVNNLDFGRTDCGLPMTWATENNLKFDVFIIYT 217
EVRCVAFCDKLTELPFTKDWKIGQVNDYVNNLDFGRTDCGLPMTWATENNLKFDVFIIYT
Sbjct: 513 EVRCVAFCDKLTELPFTKDWKIGQVNDYVNNLDFGRTDCGLPMTWATENNLKFDVFIIYT 572
Query: 216 DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVP 37
DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVP
Sbjct: 573 DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVP 632
Query: 36 QIVHEFVTGKI 4
QIVHEFVTGKI
Sbjct: 633 QIVHEFVTGKI 643
>gi|39593305|emb|CAE64775.1| Hypothetical protein CBG09566
[Caenorhabditis briggsae]
Length = 644
Score = 660 bits (1702), Expect = 0.0
Identities = 324/371 (87%), Positives = 345/371 (92%)
Frame = -1
Query: 1116 DRLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIKEEQSRALN 937
DRLEREQLFRFAVKGDLVKRKRK + EE A++E+ WDK+ALK+PYTE+QL+KEE+SRAL+
Sbjct: 274 DRLEREQLFRFAVKGDLVKRKRKANDEEKAKIEESWDKRALKVPYTEQQLVKEEKSRALD 333
Query: 936 LVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETLFDVSMPMTAMIRNLA 757
LVEAYL LK EQSEEVIV AIKKHGLVREHLPT+SLNSKLVWETLFDV MPMTAMIRNL
Sbjct: 334 LVEAYLSLKQEQSEEVIVEAIKKHGLVREHLPTSSLNSKLVWETLFDVPMPMTAMIRNLG 393
Query: 756 KMTVVGALDEKRVDNIVKRLTDQEELRRSRIHPINLLTARAVYAQGRGDKGSLTWEPNQK 577
KMT+VGALD+ RV +IV RLTDQEELRR+RIHP+ LLTAR+VYA+GRGDKGSLTWEPNQK
Sbjct: 394 KMTLVGALDDNRVKSIVSRLTDQEELRRARIHPLTLLTARSVYARGRGDKGSLTWEPNQK 453
Query: 576 ICDALEAGFYKAFVNAPPTGKRYCLALDVXXXXXXXXXXSPLSCREAATGMSLINLHNEA 397
ICDALEAGFYKAFVN+PPTGKRYCLALDV SPLSCREAATGMSLINLHNEA
Sbjct: 454 ICDALEAGFYKAFVNSPPTGKRYCLALDVSGSMCSPVSSSPLSCREAATGMSLINLHNEA 513
Query: 396 EVRCVAFCDKLTELPFTKDWKIGQVNDYVNNLDFGRTDCGLPMTWATENNLKFDVFIIYT 217
EV+CVAFCDKLTELPFTKDWKIGQVNDYVNNL FG TDCGLPMTWATENNLKFDVFIIYT
Sbjct: 514 EVKCVAFCDKLTELPFTKDWKIGQVNDYVNNLSFGSTDCGLPMTWATENNLKFDVFIIYT 573
Query: 216 DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVP 37
DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAY+YSIADPSDAGMLDITGFDSAVP
Sbjct: 574 DNDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYNYSIADPSDAGMLDITGFDSAVP 633
Query: 36 QIVHEFVTGKI 4
QIVHEFVTG I
Sbjct: 634 QIVHEFVTGNI 644