Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= C06A1_6
         (414 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17531543|ref|NP_496278.1| gene producing two messages overlap...   179   1e-44
gi|39597419|emb|CAE59649.1| Hypothetical protein CBG03063 [Caeno...   176   7e-44
gi|31214787|ref|XP_315900.1| ENSANGP00000017467 [Anopheles gambi...   132   2e-30
gi|17864588|ref|NP_524910.1| CG1163-PA [Drosophila melanogaster]...   130   4e-30
gi|47217008|emb|CAG01636.1| unnamed protein product [Tetraodon n...   130   6e-30
gi|13786166|ref|NP_112625.1| polymerase II [Rattus norvegicus] >...   129   2e-29
gi|6573580|pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of ...   128   2e-29
gi|45382031|ref|NP_990065.1| RNA polymerase common subunit RPB6 ...   128   2e-29
gi|11527390|ref|NP_068809.1| DNA directed RNA polymerase II poly...   128   2e-29
gi|50540154|ref|NP_001002544.1| zgc:92790 [Danio rerio] >gnl|BL_...   127   5e-29
gi|19075456|ref|NP_587956.1| dna-directed rna polymerases i, ii,...   126   8e-29
gi|50422341|ref|XP_459733.1| unnamed protein product [Debaryomyc...   126   1e-28
gi|46433385|gb|EAK92827.1| hypothetical protein CaO19.2643 [Cand...   126   1e-28
gi|50416676|gb|AAH77687.1| Unknown (protein for MGC:89914) [Xeno...   125   2e-28
gi|45190327|ref|NP_984581.1| AEL279Cp [Eremothecium gossypii] >g...   124   3e-28
gi|6325445|ref|NP_015513.1| subunit common to RNA polymerases I,...   124   4e-28
gi|50288735|ref|XP_446797.1| unnamed protein product [Candida gl...   124   4e-28
gi|50555217|ref|XP_505017.1| hypothetical protein [Yarrowia lipo...   122   2e-27
gi|38106302|gb|EAA52629.1| hypothetical protein MG05321.4 [Magna...   121   3e-27
gi|49075714|ref|XP_401904.1| hypothetical protein UM04289.1 [Ust...   121   3e-27
gi|50303495|ref|XP_451689.1| unnamed protein product [Kluyveromy...   121   4e-27
gi|4960150|gb|AAD34613.1| DNA-directed RNA polymerase IIa [Nicot...   120   5e-27
gi|48098111|ref|XP_393973.1| similar to ENSANGP00000017467 [Apis...   120   6e-27
gi|15242235|ref|NP_200007.1| DNA-directed RNA polymerase II, put...   120   8e-27
gi|50399946|gb|AAT76334.1| putative DNA-directed RNA polymerase ...   119   1e-26
gi|22093730|dbj|BAC07023.1| putative DNA-directed RNA polymerase...   119   1e-26
gi|15224039|ref|NP_178540.1| DNA-directed RNA polymerase II, put...   118   3e-26
gi|50256341|gb|EAL19066.1| hypothetical protein CNBH1680 [Crypto...   115   1e-25
gi|46124611|ref|XP_386859.1| hypothetical protein FG06683.1 [Gib...   112   2e-24
gi|49090846|ref|XP_406884.1| hypothetical protein AN2747.2 [Aspe...   112   2e-24
gi|46229627|gb|EAK90445.1| DNA-directed RNA polymerase subunit [...   108   3e-23
gi|29841200|gb|AAP06213.1| similar to NM_080171 RNA polymerase I...   100   6e-21
gi|13812224|ref|NP_113355.1| DNA-DIRECTED RNA POLYMERASES I, II,...    96   2e-19
gi|19173358|ref|NP_597161.1| DNA-DIRECTED RNA POLYMERASE I [Ence...    94   8e-19
gi|25140279|gb|AAM77737.2| RNA polymerase II subunit Rpb6 [Giard...    90   9e-18
gi|14578297|gb|AAF99463.1| PV1H14085_P [Plasmodium vivax]              89   2e-17
gi|16805136|ref|NP_473164.1| DNA-directed RNA polymerase subunit...    89   2e-17
gi|23485934|gb|EAA20655.1| Plasmodium vivax PV1H14085_P [Plasmod...    87   6e-17
gi|48840232|ref|ZP_00297159.1| COG1758: DNA-directed RNA polymer...    68   5e-11
gi|20095016|ref|NP_614863.1| DNA-directed RNA polymerase subunit...    67   6e-11
gi|18285650|sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase sub...    65   2e-10
gi|21227861|ref|NP_633783.1| DNA-directed RNA polymerase subunit...    65   2e-10
gi|14601067|ref|NP_147593.1| DNA-directed RNA polymerase subunit...    65   2e-10
gi|15678071|ref|NP_275185.1| DNA-dependent RNA polymerase, subun...    65   4e-10
gi|20089488|ref|NP_615563.1| DNA-directed RNA polymerase, subuni...    64   5e-10
gi|34905016|ref|NP_913855.1| putative DNA-directed RNA polymeras...    64   9e-10
gi|11498731|ref|NP_069960.1| DNA-directed RNA polymerase, subuni...    62   3e-09
gi|18313953|ref|NP_560620.1| DNA-directed RNA polymerase subunit...    60   1e-08
gi|15897794|ref|NP_342399.1| DNA-directed RNA polymerase subunit...    58   4e-08
gi|48477615|ref|YP_023321.1| DNA-directed RNA polymerase subunit...    57   6e-08
gi|41718460|ref|ZP_00147461.1| COG1758: DNA-directed RNA polymer...    57   1e-07
gi|13542056|ref|NP_111744.1| DNA-directed RNA polymerase subunit...    56   2e-07
gi|48852367|ref|ZP_00306554.1| COG1758: DNA-directed RNA polymer...    55   3e-07
gi|16082173|ref|NP_394616.1| probable DNA-directed RNA polymeras...    54   5e-07
gi|15921480|ref|NP_377149.1| 86aa long hypothetical DNA-directed...    54   7e-07
gi|14520751|ref|NP_126226.1| DNA-directed RNA polymerase, subuni...    54   9e-07
gi|18978014|ref|NP_579371.1| DNA-directed RNA polymerase subunit...    52   3e-06
gi|15790221|ref|NP_280045.1| DNA-directed RNA polymerase subunit...    52   3e-06
gi|45358890|ref|NP_988447.1| DNA-directed RNA polymerase, subuni...    50   1e-05
gi|141414|sp|P29200|RPOK_HALMA DNA-directed RNA polymerase subun...    48   5e-05
gi|15668369|ref|NP_247165.1| DNA-directed RNA polymerase, subuni...    44   0.001
gi|730614|sp|P39463|RPOK_SULAC DNA-directed RNA polymerase subun...    37   0.087
gi|22093728|dbj|BAC07021.1| hypothetical protein [Oryza sativa (...    35   0.43
gi|50312137|ref|XP_456100.1| unnamed protein product [Kluyveromy...    33   1.3
gi|9629540|ref|NP_044828.1| hypothetical protein Cp-1p16 [Strept...    33   1.3
gi|49483390|ref|YP_040614.1| ATP-dependent DNA helicase [Staphyl...    32   2.8
gi|50510925|dbj|BAD32448.1| mKIAA1431 protein [Mus musculus]           32   3.7
gi|15924217|ref|NP_371751.1| ATP-dependent DNA helicase [Staphyl...    32   3.7
gi|21282839|ref|NP_645927.1| ATP-dependent DNA helicase [Staphyl...    32   3.7
gi|3914612|sp|O50581|RECG_STAAU ATP-dependent DNA helicase recG ...    32   3.7
gi|37523068|ref|NP_926445.1| recombination protein [Gloeobacter ...    32   3.7
gi|33504577|ref|NP_780456.1| RIKEN cDNA 2810438M17 [Mus musculus...    32   3.7
gi|40538724|ref|NP_033578.1| zinc finger protein 28 [Mus musculu...    32   3.7
gi|38260678|gb|AAR15492.1| glycosyl hydrolase [Arabidopsis arenosa]    31   4.8
gi|15242174|ref|NP_196999.1| glycosyl hydrolase family 38 protei...    31   6.3


>gi|17531543|ref|NP_496278.1| gene producing two messages overlaping
           3' 5', encoding DNA-directed RNA polymerase subunit
           K/omega and a phycobilisome related protein (2K871Co)
           [Caenorhabditis elegans]
 gi|2500631|sp|Q17684|RPB6_CAEEL Probable DNA-directed RNA
           polymerases I, II, and III 14.4 kDa polypeptide (RPB6)
 gi|7495471|pir||T18973 hypothetical protein C06A1.5 -
           Caenorhabditis elegans
 gi|3874008|emb|CAA90053.1| Hypothetical protein C06A1.5
           [Caenorhabditis elegans]
          Length = 137

 Score =  179 bits (453), Expect = 1e-44
 Identities = 87/87 (100%), Positives = 87/87 (100%)
 Frame = +1

Query: 151 QGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRR 330
           QGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRR
Sbjct: 51  QGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRR 110

Query: 331 IPIIVRRYLPDGSYEDWPTDQLQLADW 411
           IPIIVRRYLPDGSYEDWPTDQLQLADW
Sbjct: 111 IPIIVRRYLPDGSYEDWPTDQLQLADW 137




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