Homology by BLASTX
BLASTX 2.2.4 [Aug-26-2002]
Query= 301a11
(360 letters)
Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
1,967,186 sequences; 661,712,633 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|39581027|emb|CAE72508.1| Hypothetical protein CBG19687 [Caeno... 136 1e-33
gi|17554774|ref|NP_498393.1| ribosomal Protein, Small subunit (1... 136 3e-33
gi|133761|sp|P14015|RS13_BRUPA 40S ribosomal protein S13 (17.4K ... 119 1e-26
gi|2144765|pir||R3KW13 ribosomal protein S13.e, cytosolic - nema... 117 5e-26
gi|8131699|dbj|BAA96366.1| cytoplasmic ribosomal protein S13 [Pa... 115 2e-25
gi|3688434|emb|CAA09748.1| 40S ribosomal protein S13 [Lumbricus ... 115 3e-25
gi|4506685|ref|NP_001008.1| ribosomal protein S13; 40S ribosomal... 113 7e-25
gi|50344812|ref|NP_001002079.1| zgc:91809 [Danio rerio] >gnl|BL_... 113 7e-25
gi|1350933|sp|P49393|RS13_XENLA 40S RIBOSOMAL PROTEIN S13 >gnl|B... 113 7e-25
gi|47211519|emb|CAF90315.1| unnamed protein product [Tetraodon n... 113 7e-25
gi|10121613|gb|AAG13286.1| ribosomal protein S13 [Gillichthys mi... 113 7e-25
gi|15029927|gb|AAH11192.1| Rps13 protein [Mus musculus] 113 7e-25
gi|50805893|ref|XP_424367.1| PREDICTED: similar to ribosomal pro... 113 8e-25
gi|4633275|gb|AAD26692.1| 40S ribosomal protein S13 [Cricetulus ... 113 8e-25
gi|15294037|gb|AAK95195.1| 40S ribosomal protein S13 [Ictalurus ... 113 8e-25
gi|27525286|emb|CAC82552.1| putative 40S ribosomal protein S13 [... 113 8e-25
gi|48209913|gb|AAT40507.1| cytoplasmic ribosomal protein S13 [So... 113 8e-25
gi|11276609|pir||T47888 ribosomal protein S13-like - Arabidopsis... 113 1e-24
gi|50344486|emb|CAH04329.1| S13e ribosomal protein [Timarcha bal... 113 1e-24
gi|14190367|gb|AAK55664.1| AT3g60770/T4C21_180 [Arabidopsis thal... 113 1e-24
gi|18411716|ref|NP_567104.1| 40S ribosomal protein S13 (RPS13A) ... 113 1e-24
gi|50555724|ref|XP_505270.1| hypothetical protein [Yarrowia lipo... 112 2e-24
gi|44662862|gb|AAS47510.1| ribosomal protein S13 [Glycine max] 111 3e-24
gi|33585646|gb|AAH56028.1| Rps13-prov protein [Xenopus laevis] 111 3e-24
gi|32419563|ref|XP_330225.1| hypothetical protein [Neurospora cr... 110 5e-24
gi|24266981|gb|AAN52387.1| ribosomal protein S13 [Branchiostoma ... 110 5e-24
gi|7440402|pir||T01338 ribosomal protein S13, cytosolic - Arabid... 110 7e-24
gi|18411224|ref|NP_567151.1| 40S ribosomal protein S13 (RPS13A) ... 110 7e-24
gi|38091652|ref|XP_122214.2| similar to ribosomal protein S13 [M... 107 7e-24
gi|417710|sp|P33192|RS13_CANMA 40S RIBOSOMAL PROTEIN S13 (S15) >... 109 1e-23
gi|49067968|ref|XP_398273.1| RS13_AGABI 40S RIBOSOMAL PROTEIN S1... 109 1e-23
gi|45201066|ref|NP_986636.1| AGL030Wp [Eremothecium gossypii] >g... 108 2e-23
gi|1350931|sp|P47772|RS13_ICTPU 40S RIBOSOMAL PROTEIN S13 >gnl|B... 108 2e-23
gi|22758884|gb|AAN05601.1| ribosomal protein S13 [Argopecten irr... 108 2e-23
gi|1173198|sp|P46298|RS13_PEA 40S ribosomal protein S13 >gnl|BL_... 108 3e-23
gi|553640|gb|AAC15854.1| ribosomal protein S13 [Homo sapiens] 107 3e-23
gi|6320269|ref|NP_010349.1| Protein component of the small (40S)... 107 4e-23
gi|46125341|ref|XP_387224.1| RS13_XENLA 40S RIBOSOMAL PROTEIN S1... 107 4e-23
gi|50288301|ref|XP_446579.1| unnamed protein product [Candida gl... 107 6e-23
gi|50424883|ref|XP_461031.1| unnamed protein product [Debaryomyc... 107 7e-23
gi|50311723|ref|XP_455889.1| unnamed protein product [Kluyveromy... 106 1e-22
gi|15213814|gb|AAK92182.1| ribosomal protein S13 [Spodoptera fru... 105 2e-22
gi|50284386|emb|CAH04124.1| ribsomal protein S13e [Papilio darda... 105 2e-22
gi|464705|sp|Q05761|RS13_MAIZE 40S RIBOSOMAL PROTEIN S13 >gnl|BL... 105 3e-22
gi|50258616|gb|EAL21303.1| hypothetical protein CNBD3570 [Crypto... 104 4e-22
gi|38101780|gb|EAA48691.1| hypothetical protein MG00349.4 [Magna... 104 4e-22
gi|38047993|gb|AAR09899.1| similar to Drosophila melanogaster Rp... 104 5e-22
gi|38048427|gb|AAR10116.1| similar to Drosophila melanogaster Rp... 104 5e-22
gi|2500465|sp|P78571|RS13_AGABI 40S RIBOSOMAL PROTEIN S13 >gnl|B... 104 5e-22
gi|50725632|dbj|BAD33099.1| putative 40S RIBOSOMAL PROTEIN S13 [... 104 5e-22
gi|50725631|dbj|BAD33098.1| putative 40S RIBOSOMAL PROTEIN S13 [... 104 5e-22
gi|21435725|gb|AAM53951.1| ribosomal protein S13 [Choristoneura ... 103 6e-22
gi|31215198|ref|XP_315982.1| ENSANGP00000010842 [Anopheles gambi... 103 8e-22
gi|27450757|gb|AAO14681.1| cytoplasmic ribosomal protein S13 [Py... 103 8e-22
gi|1710730|sp|P52811|RS13_ANOGA 40S RIBOSOMAL PROTEIN S13 >gnl|B... 103 8e-22
gi|49532880|dbj|BAD26675.1| Ribosomal protein S13 [Plutella xylo... 102 1e-21
gi|26190493|gb|AAN75466.1| ribosomal protein S13 [Plutella xylos... 102 1e-21
gi|17136832|ref|NP_476938.1| CG13389-PA [Drosophila melanogaster... 102 1e-21
gi|50344484|emb|CAH04328.1| S13e ribosomal protein [Cicindela li... 102 2e-21
gi|19114812|ref|NP_593900.1| 40s ribosomal protein s13 [Schizosa... 102 2e-21
gi|46227254|gb|EAK88204.1| 40S ribosomal protein S13 , transcrip... 101 3e-21
gi|49099924|ref|XP_410816.1| hypothetical protein AN6679.2 [Aspe... 101 4e-21
gi|34393549|dbj|BAC83147.1| putative 40S RIBOSOMAL PROTEIN S13 [... 99 3e-20
gi|29251121|gb|EAA42605.1| GLP_487_49607_49143 [Giardia lamblia ... 98 3e-20
gi|133765|sp|P27072|RS13_MUSDO 40S RIBOSOMAL PROTEIN S13 >gnl|BL... 98 3e-20
gi|8410|emb|CAA79496.1| ribosomal protein S17 [Drosophila melano... 96 2e-19
gi|33945083|ref|XP_340689.1| 40S ribosomal protein S13, putative... 96 2e-19
gi|50787664|emb|CAH04404.1| ribosomal protein S13 [Euplotes vannus] 94 7e-19
gi|23619516|ref|NP_705478.1| 40S ribosomal protein S13 [Plasmodi... 92 2e-18
gi|23478703|gb|EAA15717.1| ribosomal protein S15, putative [Plas... 91 4e-18
gi|6635891|emb|CAB64592.1| 40S ribosomal protein S13 [Leishmania... 85 3e-16
gi|13812294|ref|NP_113412.1| 40S ribosomal protein S13 [Guillard... 84 9e-16
gi|18314103|ref|NP_560770.1| ribosomal protein S13 [Pyrobaculum ... 77 1e-13
gi|2129260|pir||D64304 ribosomal protein S13.eR - Methanococcus ... 76 1e-13
gi|15668206|ref|NP_246999.1| SSU ribosomal protein S15P (rpsO) [... 76 1e-13
gi|49258834|pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-E... 76 2e-13
gi|20095029|ref|NP_614876.1| Ribosomal protein S15P/S13E [Methan... 75 4e-13
gi|34857390|ref|XP_345215.1| similar to Rps13 protein [Rattus no... 72 3e-12
gi|14601204|ref|NP_147737.1| 30S ribosomal protein S13 [Aeropyru... 70 1e-11
gi|15679422|ref|NP_276539.1| ribosomal protein S13 (E.coli S15) ... 68 4e-11
gi|15920587|ref|NP_376256.1| 153aa long hypothetical 30S ribosom... 66 2e-10
gi|41615271|ref|NP_963769.1| NEQ487 [Nanoarchaeum equitans Kin4-... 65 4e-10
gi|15897342|ref|NP_341947.1| SSU ribosomal protein S13E (rpS13E)... 64 6e-10
gi|19173433|ref|NP_597236.1| 40S RIBOSOMAL PROTEIN S13 [Encephal... 64 6e-10
gi|21228168|ref|NP_634090.1| SSU ribosomal protein S15P [Methano... 64 9e-10
gi|14520283|ref|NP_125758.1| SSU ribosomal protein S15P [Pyrococ... 62 3e-09
gi|20089827|ref|NP_615902.1| ribosomal protein S15p [Methanosarc... 62 4e-09
gi|18978428|ref|NP_579785.1| SSU ribosomal protein S15P [Pyrococ... 61 5e-09
gi|14590011|ref|NP_142075.1| 40S ribosomal protein S13 [Pyrococc... 61 6e-09
gi|48851464|ref|ZP_00305684.1| COG0184: Ribosomal protein S15P/S... 58 5e-08
gi|46141942|ref|ZP_00147445.2| COG0184: Ribosomal protein S15P/S... 57 9e-08
gi|17534251|ref|NP_494131.1| predicted CDS, putative nuclear pro... 57 9e-08
gi|48839866|ref|ZP_00296795.1| COG0184: Ribosomal protein S15P/S... 57 1e-07
gi|45359142|ref|NP_988699.1| Probable SSU ribosomal protein S15P... 56 2e-07
gi|11498407|ref|NP_069635.1| SSU ribosomal protein S15P (rps15P)... 55 3e-07
gi|15789952|ref|NP_279776.1| 30S ribosomal protein S15P; Rps15p ... 54 7e-07
gi|48477316|ref|YP_023022.1| small subunit ribosomal protein S15... 53 2e-06
gi|133795|sp|P05762|RS15_HALMA 30S ribosomal protein S15P (HmaS1... 51 5e-06
gi|224864|prf||1202284A protein H-S11,ribosomal 51 5e-06
gi|13542039|ref|NP_111727.1| 30S ribosomal protein S13E [Thermop... 50 1e-05
gi|16082150|ref|NP_394589.1| probable 30S ribosomal protein S13 ... 50 1e-05
gi|1401205|gb|AAD05366.1| small subunit ribosomal protein S13 [C... 50 1e-05
gi|38074974|ref|XP_356672.1| similar to Rps13 protein [Mus muscu... 42 0.004
gi|38076516|ref|XP_355402.1| similar to ribosomal protein S13 [M... 38 0.009
gi|15641199|ref|NP_230831.1| sanA protein [Vibrio cholerae O1 bi... 37 0.094
gi|28189659|dbj|BAC56444.1| similar to prefoldin subunit 2 [Bos ... 33 1.8
gi|33468851|ref|NP_031762.1| procollagen, type IV, alpha 5 [Mus ... 32 2.3
gi|27696597|gb|AAH43317.1| Col4a5 protein [Mus musculus] 32 2.3
gi|26348681|dbj|BAC37980.1| unnamed protein product [Mus musculus] 32 2.3
gi|34879807|ref|XP_217069.2| similar to type IV collagen alpha 5... 32 2.3
gi|39585728|emb|CAE59930.1| Hypothetical protein CBG03416 [Caeno... 32 2.3
gi|2196753|gb|AAB61226.1| snail homolog [Ciona intestinalis] 32 3.0
gi|47572785|ref|ZP_00242827.1| COG1219: ATP-dependent protease C... 32 3.0
gi|49022830|dbj|BAC65557.2| mKIAA0402 protein [Mus musculus] 31 5.2
gi|1352730|sp|P48725|PCT2_MOUSE Pericentrin 2 >gnl|BL_ORD_ID|132... 31 5.2
gi|37675370|ref|NP_032813.2| pericentrin 2; frount [Mus musculus] 31 5.2
gi|37729937|gb|AAO24322.1| pericentrin [Mus musculus] 31 5.2
gi|26325830|dbj|BAC26669.1| unnamed protein product [Mus musculus] 31 5.2
gi|46317368|ref|ZP_00217946.1| COG2831: Hemolysin activation/sec... 31 6.8
gi|24644712|ref|NP_649688.1| CG1105-PA [Drosophila melanogaster]... 31 6.8
gi|12408675|ref|NP_036526.2| prefoldin 2 [Homo sapiens] >gnl|BL_... 31 6.8
gi|13477010|ref|NP_108580.1| integrase [Mesorhizobium loti MAFF3... 30 8.8
gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse ... 30 8.8
gi|47223710|emb|CAF99319.1| unnamed protein product [Tetraodon n... 30 8.8
gi|49482470|ref|YP_039694.1| putative membrane protein [Staphylo... 30 8.8
gi|21281941|ref|NP_645027.1| hypothetical protein [Staphylococcu... 30 8.8
gi|15923226|ref|NP_370760.1| hypothetical protein SAV0236 [Staph... 30 8.8
gi|23115029|ref|ZP_00100304.1| COG3864: Uncharacterized protein ... 30 8.8
gi|32417832|ref|XP_329394.1| predicted protein [Neurospora crass... 30 8.8
gi|47213593|emb|CAG07259.1| unnamed protein product [Tetraodon n... 30 8.8
gi|8133029|gb|AAF73467.1| myogenic regulatory factor MyoD [Clupe... 30 8.8
>gi|39581027|emb|CAE72508.1| Hypothetical protein CBG19687
[Caenorhabditis briggsae]
Length = 151
Score = 136 bits (343), Expect(2) = 1e-33
Identities = 76/97 (78%), Positives = 78/97 (80%), Gaps = 3/97 (3%)
Frame = +2
Query: 77 EVQDRIVKMAKKGLRASQIGVLLRDSHGSWTSLPXAGNKIFRIFKFKGMAPELPXDLCHL 256
EVQD+IVKMAKKGLR SQIGV+LRDSHG AGNKIFRI K KGMAPELP DL HL
Sbjct: 32 EVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFRILKSKGMAPELPEDLYHL 91
Query: 257 GKNAVAIRKHLVRSRKDIDSKNRLI---SRIHRLARY 358
K AVAIRKHL RSRKDIDSK RLI SRIHRLARY
Sbjct: 92 VKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARY 128
Score = 27.7 bits (60), Expect(2) = 1e-33
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 34 YDHSVPSWQKMTT 72
Y SVPSWQKMTT
Sbjct: 18 YRRSVPSWQKMTT 30