Homology by BLASTX


BLASTX 2.2.4 [Aug-26-2002]
Query= 248b11
         (228 letters)

Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
           1,967,186 sequences; 661,712,633 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7496493|pir||T15617 hypothetical protein C25F6.2 - Caenorhabd...    53   2e-06


>gi|7496493|pir||T15617 hypothetical protein C25F6.2 - Caenorhabditis
            elegans
          Length = 1131

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
 Frame = +2

Query: 14   LHLSLLTANHYHIPDSLLM--KKLRLISIFWDFYYSESILFSSIGS 145
            L+ S ++ N   +  S L   +KLRLISIFWDFYYSESILFSSIGS
Sbjct: 1078 LNASFVSTNRKSLSYSRLSTDEKLRLISIFWDFYYSESILFSSIGS 1123



 Score = 50.8 bits (120), Expect = 7e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +1

Query: 1    DILNASFVSTNRKSLSYSRLSTDEK 75
            DILNASFVSTNRKSLSYSRLSTDEK
Sbjct: 1076 DILNASFVSTNRKSLSYSRLSTDEK 1100


  Database: /home/niguts/usr02/tshini/ykclst/db/nr.seq
    Posted date:  Aug 11, 2004 12:04 AM
  Number of letters in database: 661,712,633
  Number of sequences in database:  1,967,186

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,286,866
Number of Sequences: 1967186
Number of extensions: 1819571
Number of successful extensions: 3398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3398
length of database: 661,712,633
effective HSP length: 51
effective length of database: 561,386,147
effective search space used: 13473267528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


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